| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1223 |
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| Symbol | rpmA |
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| ID | 8709758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1453330 |
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| End bp | 1453581 |
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| Gene Length | 252 bp |
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| Protein Length | 83 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 646483311 |
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| Product | ribosomal protein L27 |
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| Protein accession | YP_003374416 |
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| Protein GI | 283783662 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0211] Ribosomal protein L27 |
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| TIGRFAM ID | [TIGR00062] ribosomal protein L27 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000141785 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCACATA AGAAGGGTGC GTCTAGCTCG CGCAACGGTC GCGACTCACA AGCGCAATAT
CTTGGTGTTA AGAAGTTTGG CGGTGAAGCT GTAGTGGCTG GCAACATTAT CGTTCGTCAG
CGCGGCACTA AGTTCCACGC AGGTCAGAAC GTTGCTTTGG GCAAGGATCA CACGCTGTAC
GCTTTGGTGG ACGGCAATGT GAAGTTCGGT ATTCGTCGCG ACCGCAAGGT TGTTGACGTT
GTTACCGCCT GA
|
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| Protein sequence | MAHKKGASSS RNGRDSQAQY LGVKKFGGEA VVAGNIIVRQ RGTKFHAGQN VALGKDHTLY
ALVDGNVKFG IRRDRKVVDV VTA
|
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