Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1214 |
Symbol | |
ID | 8708978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1441623 |
End bp | 1442642 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 646483302 |
Product | sortase family protein |
Protein accession | YP_003374408 |
Protein GI | 283783654 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3764] Sortase (surface protein transpeptidase) |
TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000620808 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAATTAA ACGACGCTGT TGTTAAAGTA TATGCTTTCT TCAAGCAACT CAAAGCAAAA CCCGTCGCTT CTGCAACCGA AACAACACCA GCCTCCACAG CAACGCAAAC CGCAGCCTCC GCAACTGCAA CAAAACCCGC TAAAAAACCC AAATCCAAAC TCCGCCGTAT TTTAGAGCCA ATCGTTCTCG CGCTTGCAGC GATTCTGTGC TTCACGTACC CGATTGCGTC AACGTTGTGG AATAACAAGG TGTCGAAGGA GATTTCTGTA GCTTATGATC GGCTGAGTCG TAAGCAGACT GCGAGCGCTA GAGAGAAGAT TTTGAACGCG GCTCGTCGTT ATAATGCGCG CCACAAGTCG ATTATTACGG CTGATCCGTA CAATGGCACG ACGGATTATA TGAAGACGCC GGAGTATAAG GAGTATGCGA AGCAGCTGGA TGAGCCGATG GGGATTATGG GTATTGTGAA AATCCCGAAG ATTGGCGTTA AGCTGCCGAT TTACCACGGT AGTTCGCAGG AGGTTTTGGC GTATGGCGCT GGACACTTGT ATGGCACAGA TTTGCCGGTT GGGGGTAAAA CGCGTCACGC TGTTGTGACG GCGCATACGG GTTTGCCAAA TGCGACCATG TTTGATGATT TAGTGGAGTT GAAGAAGGGT GATTTCTTCT ACTTTGACGT GCAGGGGGAG ACGCTGCGTT ACAGGGTATT CCGCATTAGC GTGGTCGATC CGCATGATAT TAGGTTACTT CAACGCGAGA ATGGGCGTGA TCTGGCGACG CTGCTTACCT GTACGCCGTA TGGTGTTAAT ACGCAGAGAT TGCTGGTGAC AGGCTATCGC GTGCTGCCGG ATCCTGTTTC CGTGCCGGGC GATAAGTTGC AGTGGCCGCT TTGGATGACG ATGTTTGTGC TCGCGCTTAT TGGTTGCGCT GTGATTCTTA CGACGATGAT TATTGCCGCG GTTCGCAAGC GCCACCGCCG TGCTGCTTCA CTTGCTCATG CCAAACATAT AACTGCTTAG
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Protein sequence | MKLNDAVVKV YAFFKQLKAK PVASATETTP ASTATQTAAS ATATKPAKKP KSKLRRILEP IVLALAAILC FTYPIASTLW NNKVSKEISV AYDRLSRKQT ASAREKILNA ARRYNARHKS IITADPYNGT TDYMKTPEYK EYAKQLDEPM GIMGIVKIPK IGVKLPIYHG SSQEVLAYGA GHLYGTDLPV GGKTRHAVVT AHTGLPNATM FDDLVELKKG DFFYFDVQGE TLRYRVFRIS VVDPHDIRLL QRENGRDLAT LLTCTPYGVN TQRLLVTGYR VLPDPVSVPG DKLQWPLWMT MFVLALIGCA VILTTMIIAA VRKRHRRAAS LAHAKHITA
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