Gene HMPREF0424_1200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1200 
Symbol 
ID8709729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp1426244 
End bp1426894 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content47% 
IMG OID646483289 
ProductBioY family protein 
Protein accessionYP_003374395 
Protein GI283783641 
COG category[R] General function prediction only 
COG ID[COG1268] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones4 
Fosmid unclonability p-value0.0000053254 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCAACA TAGATCAAAA TAATGCAGCA ACAGCATCAG CAAATTCAAA CGTTGCAAAT 
AAGTTGAAAG TAGCTGCAGC ATGGCTTGCA AAGCCAGCGC TTCTCACTGT GCTTTTGGCT 
CTTTCTACCA TGGCAGGCGC AATTTATCTT CCTATTACTC CTGTGCCTAT TACGTTGCAA 
ACTCTTGTTT TGTGCATTAT TGGTTTAACG TTGAGCTGGC GAGAAGGCGT AGCTTCTGTA 
GTTATGTATC TTGCTGTTGG TGCGGCAGGT TTGCCTGTGT TTGCTGGCTT TAAGGGCGGC 
TGGGCTGTTT TTGTTGGCCC TACTGCAGGA TTCTTAGCCG GTTTCATATT TGGCGTTGCC 
GCAACTGCAG CTTTGAAGCG CGTATTTGAC GTAGCTCTTG ACGCAATGAT GCCAGAAAAC 
TCCTTCAAGA AGACTTTCGC ACGCTTCTGC ACTTACTCTG TAGCTTCTAT AATCGGCACG 
ATCGTGATTT ACGCATTCGG CATTTTCGGC CAAAGCTACC TAACTGGCAT GCCACTTTCA 
ACTGCCGCCG CAACCTTGAT TATCTTCATG ATTGGCGATT TGATTAAGGC TTTTGTTGCG 
AGCGCGGCTT GCTCCGGCTT GTACAACGCA CTTAACAAAA AGCGTGCGTA G
 
Protein sequence
MTNIDQNNAA TASANSNVAN KLKVAAAWLA KPALLTVLLA LSTMAGAIYL PITPVPITLQ 
TLVLCIIGLT LSWREGVASV VMYLAVGAAG LPVFAGFKGG WAVFVGPTAG FLAGFIFGVA 
ATAALKRVFD VALDAMMPEN SFKKTFARFC TYSVASIIGT IVIYAFGIFG QSYLTGMPLS 
TAAATLIIFM IGDLIKAFVA SAACSGLYNA LNKKRA