| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1199 |
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| Symbol | |
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| ID | 8709227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1424125 |
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| End bp | 1426038 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483288 |
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| Product | carbamoyl-phosphate synthase L chain, ATP binding domain protein |
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| Protein accession | YP_003374394 |
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| Protein GI | 283783640 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000920632 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTACGA ATATCAAAAA AATCCTCATC GCAAACCGCG GTGAAATTGC CTTGCGAGTT
ATTCGCACGG CTCACGAAAT GGGCATTTCT ACCGTTGCTA TTTACGCACC GACTGATCGC
AACGCGCAGT TTGTAGAAAT GGCAGACGAA GCGTACGCAC TTTCCGGAGA CACATATCGC
GATACTTATT TAAACGAAGA TGCGATTCTT GACATTATTA AAAGAAGCGG CACGGATGCT
GTGCACCCTG GCTATGGTTT CCTTTCGGAA GTTGCGTCTT TTGCTAAGAA GGTCAACGAT
GCTGGGGTTA TTTGGATTGG TCCGCGCCCG GAAGCGCTTA TTGATTTGGG AGATAAGATT
ACGGCTCGCC GCGTGGCTGT TCGCGCGAAA GTGCCGCCAG TTCCAGGAAT TTCGGAGCCT
GTGAAAGATA TTCGAGAACT TTTAACTTTT GCGCAAACTC ACGGCTATCC AGTGATGATG
AAGCGCACGG ATGGCGGCGG CGGACGCGGC ATTACAGTCG TTCGTAACGA CGACGAGTTG
CGCGGCTTTT ACATGAATCA CGACGCTTTG CAGGGCGGCG ACTTAGACGA ATATTTTATT
GAGCGTTTTA TTGACAAGGC TCGCCACGTT GAAACACAGT GCGGCCGCGA CGCTCACGGA
AATTTCACCG TATATTCCAC GCGCGATTGC TCGGTGCAGC GCCGAAACCA AAAGCTGGTT
GAGGAAGCTC CTGCACCGTT CTTGACTGAC GATGAAAAAG ATCAGCTTTA CCGATATTCT
CGTAACCTAT TTGAAGCTGT TGACTACGTT GGTCTTGGCA CGTGCGAATA TATGGTGACT
TCTCAGCATA AAGTCTACTT CTTGGAAGTT AATCCGCGAT TGCAAGTTGA GCACACGGTT
AGTGAGGAAG TTAGTGGACT TGATTTAGTG CGAGAACAGC TCAATATTGC TGACGGCGGC
GAGTTGATTA AGGATCCAGA GCCTCGCGGA CACAGCTTCG AGCTTCGCAT TACTTCGGAA
GATCCTGCTA CGAATTTGAC TCCAAGTTCC GGCACTTTGA CGAAAATAAA GTGGCCTTCC
GGTCCTGGTA TTCGCGTCGA TTTTGGCGTT GAAGTTGGCG ATAATATTTC GCCAAAATTC
GATTCGATGA TGGGCAAGCT TATTATTACT GCGCAAAGTC GCGAAACTGC TGTTGCTCGC
GTGCGTCGCG CTTTGAAGGA ACTTTGTATT GAGGGCGTGC CAACTCCTGC GAAACTTTTT
GAGCAGATTT TTAACGACCC TGAGTTTACT GCGGAAAATC ACAGTTTTGA TGTGTCTACT
AAGTGGATGG AACGCAAGTA TTTGAACCGC GTTCCTGCAG CTTCTTTGGG CGGTCAGCCG
GCTTCGCTTG TTTCTGGAAA GTCTGCGGAT GAATCCGAAA ATAAGCAGCC TGCAATGGAA
TCCTTCATTA TTGAGGTTGA TAATAAGCGC GTAAAGCTTA CGATTCCGCA AGATATTGTT
GACAATTTGA CCGGCTCTGC GCGAGTTCGT AGCGTTTCTA GAGCTTCGCA GCCTTTGCGT
GGACGTTCGC TTCGCGGAAG TACTCACAAA TCTGAAGAAC AAAAGCAGAT TCCTGGCGTA
ATCGCAGCAC CTATGCAAGC TGTTATTACG CGCGTGAATG TGGCTGAAGG TCAGCAGGTT
GCCAAGGGTG ATTTGCTTGT GGTGCTTGAG TCTATGAAAA TGGAAAATTA CGTTTACGCT
CCTGCAGCTG GTACTGTTAC TGGAATTTTT GTGGGTCCTG GTGACGGCGT GGAATCGGGT
GCAAAGCTTG TGACGATTGA TCTTGCTGGA GATAAAAGCG CGGATAAGAG CGCAGATAAG
TCTTCTGAAT CTTCTGAAAA GTCTTCTGAA AAGCCGGAAG GAGAGCAGAA ATGA
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| Protein sequence | MVTNIKKILI ANRGEIALRV IRTAHEMGIS TVAIYAPTDR NAQFVEMADE AYALSGDTYR
DTYLNEDAIL DIIKRSGTDA VHPGYGFLSE VASFAKKVND AGVIWIGPRP EALIDLGDKI
TARRVAVRAK VPPVPGISEP VKDIRELLTF AQTHGYPVMM KRTDGGGGRG ITVVRNDDEL
RGFYMNHDAL QGGDLDEYFI ERFIDKARHV ETQCGRDAHG NFTVYSTRDC SVQRRNQKLV
EEAPAPFLTD DEKDQLYRYS RNLFEAVDYV GLGTCEYMVT SQHKVYFLEV NPRLQVEHTV
SEEVSGLDLV REQLNIADGG ELIKDPEPRG HSFELRITSE DPATNLTPSS GTLTKIKWPS
GPGIRVDFGV EVGDNISPKF DSMMGKLIIT AQSRETAVAR VRRALKELCI EGVPTPAKLF
EQIFNDPEFT AENHSFDVST KWMERKYLNR VPAASLGGQP ASLVSGKSAD ESENKQPAME
SFIIEVDNKR VKLTIPQDIV DNLTGSARVR SVSRASQPLR GRSLRGSTHK SEEQKQIPGV
IAAPMQAVIT RVNVAEGQQV AKGDLLVVLE SMKMENYVYA PAAGTVTGIF VGPGDGVESG
AKLVTIDLAG DKSADKSADK SSESSEKSSE KPEGEQK
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