| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1186 |
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| Symbol | |
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| ID | 8709426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1391757 |
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| End bp | 1392911 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646483276 |
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| Product | LICD Protein Family |
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| Protein accession | YP_003374383 |
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| Protein GI | 283783629 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3475] LPS biosynthesis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTCGC AGTTACGTCG CATAGTGAGT TGGATAATAG GCAGACTCCC TTCGTCAAAA
CGCTCTATTG TGGAAGTGCG CGAGCAGCTG AGCACTATTC AAACGCAAAT TTCTCGATTG
CAAGAATGTG TCGACGCTCG CTGCGCTCAT CTTGAGGTTG GACAGTATAA CGTTGAGAAG
TCGTTGCGTG CGGAGATTTT GACGAATCGT GAGCAGTCTT CGATTATGGC TTGGTCAAAC
TATAGGAAAG ATGGCGAAAG TAGCGTGGAT GCACATAAGC GTTTCTTCCT TAGTTTGCCG
AAAGCTACAG GTTCTATGCG CGTTATACAA CGTGGTTGCG CGTCGCTGCT GAGCGAGTTT
ACGCAGATTG CGCAGCAGCA TAATCTTCAG TATTGGGCTG ATTTTGGTAC GCTGCTCGGT
TGCGTGCGTC ATCGTGGGTT TATTCCTTGG GATGACGATG TTGACTTGGG TATGATGCGA
GAGGATATCG ATAAGCTGTT AACGATGTTG CGTGAGGATG CCGCGTTGTG CGCGCGCTAC
CGTGCGGTGC TCGTGTACGA TCCGTACGTG TGCTGCCGTC AGTTGCGGTT CCGCTACGCG
AATAATAGTA ATCCTTGTTT TTTGGATATT TTCTTCTACG ATTACGCGCC TGATTTGACG
CCTGAACAGC AGCAGAGTTT TGTGTCTTTG CGTAAGGATT TGCAGCAAGA GTTGCGTTCG
CAGACTTTTT TCAACACATG GCTTGACCGC GGTTATGTTG AGCAGGGCGG CGAATACACT
GCTGATATTG AACAGATTTT TCAGAGTTTC CAAAAGAAGG CTGTAAACCA GGGGCTTGTG
GTGAGTAAGT CTTGCGCGCG CAACGTGGTG TACGGTTTGG ATAATGTTGA TGCTGAGAAT
TTGTATATTG CACGATGTGC CGAAATGTTT CCAGTAAAAA TGGCAACTTT TGAAGATTTT
TCTGTTGCTA TACCGCAGTT ATCGGAAGAT ATTTTGGAAC GCGTGTATGG TGATATTTAT
CAGCTGCCGT CGGATATTAT TACGCACTTC CGTCATGTCG ACTGTGAATC CTTGCATAGC
AGTCATACTG ACGATGTAAT CGAGCAGGAT ATTCGTTCAA ATCCGTATGC GATCGATTGT
GGCAGACTTG AGTGA
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| Protein sequence | MVSQLRRIVS WIIGRLPSSK RSIVEVREQL STIQTQISRL QECVDARCAH LEVGQYNVEK
SLRAEILTNR EQSSIMAWSN YRKDGESSVD AHKRFFLSLP KATGSMRVIQ RGCASLLSEF
TQIAQQHNLQ YWADFGTLLG CVRHRGFIPW DDDVDLGMMR EDIDKLLTML REDAALCARY
RAVLVYDPYV CCRQLRFRYA NNSNPCFLDI FFYDYAPDLT PEQQQSFVSL RKDLQQELRS
QTFFNTWLDR GYVEQGGEYT ADIEQIFQSF QKKAVNQGLV VSKSCARNVV YGLDNVDAEN
LYIARCAEMF PVKMATFEDF SVAIPQLSED ILERVYGDIY QLPSDIITHF RHVDCESLHS
SHTDDVIEQD IRSNPYAIDC GRLE
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