Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1180 |
Symbol | |
ID | 8709720 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1383146 |
End bp | 1384114 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646483270 |
Product | glycosyltransferase, group 2 family protein |
Protein accession | YP_003374377 |
Protein GI | 283783623 |
COG category | [R] General function prediction only |
COG ID | [COG1216] Predicted glycosyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAATG CTCAAGTAGT GAATGCTAAT AAATCAAAAG ATAGCGTTAA TGTTGCGGCT GTTGTAGTAA CTTTTAACAG GTTAGAGAAA CTAAAAACCG TATTGGCTTC GTTAGAATCT CAAACGCGAC TTCCAAATCA ACTAATCATT GTTAACAATG CTTCAACTGA TGGCACAGAT AAATATTTGC AAGAGTACAC TCGCGATTTT GCGAATGGTC ATTTGGGGAA TCGAGTAAAT CTTACTGTTG TAAATTTGCC AGAAAACGTT GGCGGTGCAG GTGGCTTTAG TGCTGGTATG CGTAAAGGCT ACGAGCTTGG CGCAGATTTC GTGTGGATTT TTGACGACGA TGGCTACCCT CAGCCACAAG CTTTGGAAAA GCTTCTAGAT GGATTTAATG CTGCCGTAGG TGAGCTTGGT GCGGATGTTC CGTATGCTTG CTCAATGGTT AAGTTTGTTG ATGGATCAAT ATGCGAAATG AACAATCCAG TACCAACGTG GGATTGGGGA AGGCTTATTG CTAAAGGATT TAACAATCTC GTTATGGTTA CAAGCTGTTC GTTTGTGTCG GTGCTTATTC CTCGTTGGGT TATAGAAAAG TACGGATTGC CATTTAAAGA ATACTTTATT TGGTTCGATG ATGCCGAATA TACACTTCGT ATTACGCGTG TATGCCCGGG CGTGCAGGTT CTCGATAGTG TAATTATGCA TGATATGGGA GCAAACAAGG GTGTGAACTT TACAATGATT GACAAAAAGA ATGCTTGGAA ATTCGCATAC GGCGTGCGTA ATCAAGCATC TTACCGTTTG CATCACGAAG GTAAGGCAAA ATACTTGCTT TTCTGCGCAA ATGTAGTTCG TCAAATGCGA AGAGGGCATG TTGAGAGAAA GTTGCGCCGC AAAATGATTG GTCAAATGCT AAAAGCGATT AGATTTAATC CAAAAGTTGA TTTTCCTAAA AATAAGTAG
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Protein sequence | MSNAQVVNAN KSKDSVNVAA VVVTFNRLEK LKTVLASLES QTRLPNQLII VNNASTDGTD KYLQEYTRDF ANGHLGNRVN LTVVNLPENV GGAGGFSAGM RKGYELGADF VWIFDDDGYP QPQALEKLLD GFNAAVGELG ADVPYACSMV KFVDGSICEM NNPVPTWDWG RLIAKGFNNL VMVTSCSFVS VLIPRWVIEK YGLPFKEYFI WFDDAEYTLR ITRVCPGVQV LDSVIMHDMG ANKGVNFTMI DKKNAWKFAY GVRNQASYRL HHEGKAKYLL FCANVVRQMR RGHVERKLRR KMIGQMLKAI RFNPKVDFPK NK
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