| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1176 |
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| Symbol | |
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| ID | 8709639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1378920 |
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| End bp | 1379996 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483266 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374374 |
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| Protein GI | 283783620 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.640658 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAGT TTTCTTGGCG TAGCAGTGCG CATGATTTGG ATTCATCAAA TATTGATTCC
TCTTCAACAA AAAAGCAACA ATCTTCAAAA TTGCAATCAA CAGGTTCAAA GACTTTTGAC
ACATCAAAAT CTGCAACAAA AGCAATCGAA GGTACTCCAA ATAAACCTAA TCCAGCGTTA
AATCATTCTA CAAACGCTAT TCTTGTAGGA ATATTTTTAA CTCTTTTAGG TGGCGCATTT
TGGGGTGCAA ACGCAACAGT TTCGAAAATC CTCATGTCGA CGTATCGCGT ATCTCCTTTG
CAAATCGCTT GCGTTCGTCA AATTGCTGCT GGCATGTTAT TTGTCATTAC TGCTGCAGCT
TGCACTCCTA AGCAGTTAAG TGGTGCTGTG AAAACTGGTC GCACGTGGAT TTCGATGGCG
GTTACAGGCG TAGTTTGCGT GCTTCTTACG CAAGTTTCGT ACTTGTGCAC AATCGACTGG
ACTAATTCCG GCACTGCAAC TGTGCTTCAG AGCCTTAATC TTCTGTTCGT GCTGGTTTAC
GCATGCTTGC ACACGCGCCG CGTGCCAACT ATGCGCGAAA CTATTGGAGT TGTGCTAGCT
TTTGCAGGAA CTGCTTTAAT GGCTACAGGT GGTAATCTTT CTTCACTGTC TTTGCCTGTT
ATGGGTTTGC TTTGGGGTCT TGCAGATGCT GCGTCTACAG CGGCGCTTGC TATTATGCCT
GTGAAATTGA TTGCAAAATG GGGAAATCTG ACTGTTAATG GCATTACGTT TATTATTTCT
GGTTGTATTA TGCTCCCGTT TGTGCGACCG TGGGAAACGA TGCCTGCATT AGATTTGCGC
GCTATGCTGC TTTTTACTTT TACTGTTATT GCTGGAACTT TTGGAGCATA TTGGCTGTTC
TTAGAGGGCA TTATGCGAGT AGGCTCTGTT CGTGGCACTT TGCTTGGAGC TAGCGAGCCT
GTTACTGCTG CAATTACTGC TGTTATGTTT ACTGGAGCTG TTTTTTCATG GGCAGATTTT
GTGGGATTCG GGCTTATTTT CGTAATGATG ATTTTGCTTT GCAAGCGTAG TTCTTAA
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| Protein sequence | MVKFSWRSSA HDLDSSNIDS SSTKKQQSSK LQSTGSKTFD TSKSATKAIE GTPNKPNPAL
NHSTNAILVG IFLTLLGGAF WGANATVSKI LMSTYRVSPL QIACVRQIAA GMLFVITAAA
CTPKQLSGAV KTGRTWISMA VTGVVCVLLT QVSYLCTIDW TNSGTATVLQ SLNLLFVLVY
ACLHTRRVPT MRETIGVVLA FAGTALMATG GNLSSLSLPV MGLLWGLADA ASTAALAIMP
VKLIAKWGNL TVNGITFIIS GCIMLPFVRP WETMPALDLR AMLLFTFTVI AGTFGAYWLF
LEGIMRVGSV RGTLLGASEP VTAAITAVMF TGAVFSWADF VGFGLIFVMM ILLCKRSS
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