Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1152 |
Symbol | |
ID | 8709644 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1333785 |
End bp | 1334471 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646483243 |
Product | acetyltransferase, GNAT family |
Protein accession | YP_003374351 |
Protein GI | 283783597 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.294962 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTGTTG AATTTCGTTC TGTAAAACTC AGTGATATTG ATGCAATGGT TAAAGAATAT GAACGTACTT GGGGTATTGC GCAAAAAGTT GGGAAAGATG CTTCGTTAAG TCTTTCTCGA AGATGTGTGT TGCATTACTT AGAACCTTCA ACGCATGGTA CTATTGCTGA AATAGACGGT AAGTTTATGG GTCTGCTTTT GGCGCGAGTT TTTGACGCAC CTGTTTTATT TCCAGAAGTA GGGAGAATGC TTCGCGAGCA AGAAGCCGCA ATGAAAGAAA ATTGTGACAA AAACTATGCT CTCGCTTTAG AAGAAGCGTA CGGCATGCGC GCGTTGGAAA CTAAACTTGA AGCGAAATCT CATATCAATA ATTTAACTCA AGCGGAATTG GAGCTTTTCC TTGTTTCTCC AGATGCTCGT GGGCATGGTG TTGGTGGAGG CTTGTGGAAG CGAACAATGC ATATGCTAAG AAATAACGGA GTAAATCGTT ACTATTTGCA TACTGATTCA GCGTGTGACG TAAGCTTTTA TGATTATCAC GGGCTTAGAA GAGATGCTTC TTTTATGCGC TCGGATCATC CTTATGAAGC TAAGAACGTG AAATCTTTGG TGGATGACTT GTATATTTAC TCAGGTGAGC CGAGAGTTCG TTCAAAGCAA GCAAATGCTC GTTCTAAAAT GCGTTAA
|
Protein sequence | MTVEFRSVKL SDIDAMVKEY ERTWGIAQKV GKDASLSLSR RCVLHYLEPS THGTIAEIDG KFMGLLLARV FDAPVLFPEV GRMLREQEAA MKENCDKNYA LALEEAYGMR ALETKLEAKS HINNLTQAEL ELFLVSPDAR GHGVGGGLWK RTMHMLRNNG VNRYYLHTDS ACDVSFYDYH GLRRDASFMR SDHPYEAKNV KSLVDDLYIY SGEPRVRSKQ ANARSKMR
|
| |