| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1125 |
|---|
| Symbol | nrdD |
|---|
| ID | 8708790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1295507 |
|---|
| End bp | 1297924 |
|---|
| Gene Length | 2418 bp |
|---|
| Protein Length | 805 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646483216 |
|---|
| Product | anaerobic ribonucleoside-triphosphate reductase |
|---|
| Protein accession | YP_003374324 |
|---|
| Protein GI | 283783570 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTTT TGGAAGAAAC TGCTGTCACA AGCGCAGAAA ATTGTACGGA TGATGTAGTT
GAAGTTCCAG TTTCTCGCGT GCAGGTCGAA AAGCGCGATG GTCGCGTAGT TGATTTTGAT
CCGCTGAATA TCATTATGGC AATCAAGGCT GCTTTTAAGG ATTTGGGCAA GGAAATCGGT
CCGCAAGAAG AGCAGTTGAT TCGTAATATT TCTGATCATA TTGAGGCTGA AATTCAAGAT
CGTTACAATG GTCCGGCGAA GATTGAAGAT ATTCAGACCT TGGTTGAGCA TAGTCTTATT
GAAAATCACC TTTATGAGGT TGCTCGTTGC TACACGAGCT ACCGACTGAA CCGAGATATA
GACCGCGCTA GGGCTACTGA TATCAACGAG GCTGTTAACC GTCTTGTAAA TCGTGATGAG
TCTCTTGTTC GTGAAAACGC AAATAAGGAT TCTAATGTTT ATGCAACTCA GCGTGATCTT
CTTGCAGGTG CTGTTTCTAA AGCTTCTGCG TTCTCTATGC TTCCTCACGC AGTTTCTAAC
GCTCATATGA AGGGTGATAT TCACTTCCAT GACGCTGATT ATTCGCCATT TACTTGCATG
AGCAACTGCT CGCTTCCTGA TTTTGGCGAT ATGCTTGCTA AGGGATTTGC TCTTGGTAAT
GCAATGATGG ATAGTCCAAA GTCTATTGGT ACTGCTGCAA CTCAGGTTAC GCAAATTATT
AAGGATATTG CTGGCGCGCA ATACGGTGGT CAGACTGTTA ATCGCGCTGA CGAAATGCTT
GAGCCTTACG CTAAGTGCGA TTACGACAAG AATCTTGCTA TGGCACACGC AATGATTCCT
GATTCCACAC CAATTCAAGT CGCAAAAGAT ATGATTGACG GCTTGAAGGC TCAGGAGCCT
AAGAATCTCC ACTGCTTGGA CAGGGATCCA CTGCCTGCTG ATACTCCTTT TGATGAAAAT
TTGAGCGAGC TTGATCAGCT TCGTGAAGTT TACGCAAAGA TTATGACGCG TAAGGCTATT
TACGACGCTA TGCAAACTAT GGAATATCAA ATTAATTCCA ACCGCGTTTC TAACGGTCAG
ACTCCGTTCG TAACTGTTGG ATTTGGCTTG GGTACTTCTT GGTTTGCTCG TGAAATTCAG
CGCGCTATTT TGCTTAACCG TATTCGCGGT CTCGGCAAAG ATCGTCATAC TGCAATCTTC
CCTAAGCTTG TGTTTACTAT TAAGCACGGT GTAAACGCAG ACGCTGGCGA CCCGAACTAC
GATTTGAAGC AGCTTGCGCT TGAATGCTCT ACAAAGCGCA TGTACCCAGA CGTTGTGTTC
TACGAGAATA TTGTTAAGAT TACTGGCTCC TTCAAGGCTC CTATGGGTTG CCGTTCGTTC
CTTCAGGGTT GGATTGATCC AAAGACCGGC AAGGACGTTG AAGATGGCCG TATGAATCTT
GGCGTTGTAA CTGTTAACAT GCCACGTATT GCTCTTGAAT CTCACGGCGA TGTGACTCGC
TTCTGGAAGC TTTTCGACGA GCGTATGGAA GTAGCTCACC AAGCTTTGCG ATTCCGTATT
ATGCGTTGCA AGCAGGCAAC TCCTGTAAAT GCTCCAACGC TGTTCCGTTA CGGTGCTTTT
GGTCGTTTGG AAGCTAACGA AAGCGTGGAT CAGTTGTTCC GTAATGAGCG CGCAACTGTT
TCTCTTGGCT ACATTGGTTT GTACGAAACT ACGGCCGTGT TCTTCGGCAA GGATTGGATG
CAAGATCACA GCTGGAATGA GGAAGGCAAG GAATTTGCGC TTTCTTTGGT TCGCCGCATG
AATAAGCTTT GCCAGCAGTG GTCAAAGGCG GAAGGCTACC ATTATTCCGT TTACTCAACT
CCTGCTGAGT CTTTGACTGA CCGCTTTAAC CGCATGGATC GCCAGAAGTT CGGTCGCATT
GAAGGCGTAA CTGATCACGA CTTCTACACT AATTCCTTCC ATTACCCGGT TTGGTTGCAG
CCAACTCCTA TGGAGAAGCT TCGCTACGAG GTTGACTTCC CGTATCTTGC TTCCGGCGGT
TTTATTAACT ACTGCGAGTT CCCATGCTTG CAGGCAAATC CTAAGGCTTT GGAAGCTGTT
TGGGATTACG CTTACAAGAT TGGCATCGGC TACTTGGGTA CGAATACGCC AATCGATCAC
TGCTTCGTTT GTGGATTCCA GGGTGATTTT GAGCCGACTA AAGAAGGCTT CCGTTGCCCG
GAGTGCGGCA ACAGTGACCC GGATAAGTGC AATGTGACTA AGCGCACTTG CGGCTACTTG
GGCAATCCTG TTCAGCGCCC AATGGTTCAC GGTCGTCACG AAGAAATCGC TCACCGCGTA
AAGCACATGT CTGGCGAAAC TGGTCACGTG ACTCTTAACA ACGGTGAGTC TCGCGAATGG
TATGAGGAAA CAAAATAA
|
|---|
| Protein sequence | MQVLEETAVT SAENCTDDVV EVPVSRVQVE KRDGRVVDFD PLNIIMAIKA AFKDLGKEIG
PQEEQLIRNI SDHIEAEIQD RYNGPAKIED IQTLVEHSLI ENHLYEVARC YTSYRLNRDI
DRARATDINE AVNRLVNRDE SLVRENANKD SNVYATQRDL LAGAVSKASA FSMLPHAVSN
AHMKGDIHFH DADYSPFTCM SNCSLPDFGD MLAKGFALGN AMMDSPKSIG TAATQVTQII
KDIAGAQYGG QTVNRADEML EPYAKCDYDK NLAMAHAMIP DSTPIQVAKD MIDGLKAQEP
KNLHCLDRDP LPADTPFDEN LSELDQLREV YAKIMTRKAI YDAMQTMEYQ INSNRVSNGQ
TPFVTVGFGL GTSWFAREIQ RAILLNRIRG LGKDRHTAIF PKLVFTIKHG VNADAGDPNY
DLKQLALECS TKRMYPDVVF YENIVKITGS FKAPMGCRSF LQGWIDPKTG KDVEDGRMNL
GVVTVNMPRI ALESHGDVTR FWKLFDERME VAHQALRFRI MRCKQATPVN APTLFRYGAF
GRLEANESVD QLFRNERATV SLGYIGLYET TAVFFGKDWM QDHSWNEEGK EFALSLVRRM
NKLCQQWSKA EGYHYSVYST PAESLTDRFN RMDRQKFGRI EGVTDHDFYT NSFHYPVWLQ
PTPMEKLRYE VDFPYLASGG FINYCEFPCL QANPKALEAV WDYAYKIGIG YLGTNTPIDH
CFVCGFQGDF EPTKEGFRCP ECGNSDPDKC NVTKRTCGYL GNPVQRPMVH GRHEEIAHRV
KHMSGETGHV TLNNGESREW YEETK
|
|---|
| |