| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1075 |
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| Symbol | |
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| ID | 8709260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1227595 |
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| End bp | 1229730 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483167 |
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| Product | peptidase family M13 |
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| Protein accession | YP_003374278 |
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| Protein GI | 283783524 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3590] Predicted metalloendopeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAACA ACAATAATAA TAGTAATAAT AAGGAATCGC AGAAGGAAAT TTCTGCTGTA
GATTTCGACC CTGCCTCCTT CTCGTCGGCT ACTCGTCCAC AAGACGATTT ATTCCGTTAC
GTAAATGGTC CTTGGATTGA CACTTACACT CTCCCAGAAG ACAAACCAAT GTATGGTGCT
TTCCACAAGC TTGCGGAAGA TGCAGAAAAG CAAATTCGAG ATATTTTAGA AAACGAAAAT
TGCCCAGCCA AAAAGTCGCA AACCTTATAC CGTAACTATT TGGATACCGC ATCTATTGAA
AAAGCTGGAA TTACGCCAAT TAAGGGCGAT TTAGACGCTG TGGATTCAGC AGAAACTAAG
GAAGATTTGG TTCGCACTAT TGGCGCGCTT AATCCGTACG GCGGTCCAGA TGCAATGTTT
TATTTTGGCG TTTACGGAGA CCCTAAAGAT CCTAAGACGA ATATTATGCA TATTGAGCAA
TCGGGATTGG GCTTGCCAGA CGAAGCATAC TATCGCGAAG ATAACTACGC TCCAATTCGC
ACTGAATATG TAAAAATGGT AGCTTCTTTG CTGCGCTTAG CAGGCTACGG AGACGCAACT
ACTACACAAG CGCAAGCCGA GCGTTTCTTG AATGTTGAAA CTAAAATAGC GAGCTACCAT
TGGGATAACG TAGCAACTCG CGATTCTCAA AAAACCTATA ATCCTTACAA TTATGCCGAT
TTAGCAAAAA CTCTTGAAGC GCTTAATCTC GACGCTTTCT TAGACGCTAC TCAAAAAGCG
TACGATAATT GCGAAGAAGC AACAAATCAG CCAATCAACC TTCGTGAAGC TTTTAACAAA
GTTGTAGTTC ACGAGCCAAG CTTTATGGAA GGTTTGAATA AGATTTGGCA AGAAGCCGAC
TTAGAAGATT TAAAGCTTTG GGCGCGCGTG CACGTGATTT TGCGCTGGGC AAGCTTACTT
AGTGAAGATT TTGCACAAGC GCGATTCGAC TTCTACGGCA AGGTGCTTTC TGGTGCCACA
AAGCAGCGCG ACCGCTGGAA GCGAGCAGTT GGAGTTGTTG ACGATGCCTG CGGCGAGGAA
GTTGGACGCG AATACGTGCG ATTGCATTTC CCTGAGTCTT CTAAGGAATA TATGCAAGGC
TTAGTTGACA ATCTTATTAA CGCTTACCGC GAGTCGATTT CTCACAGCAG CTGGCTTGGT
GAGGAAACTA AAGCGAAGGC TTTGGAAAAG ATTAGTAAAT TTGAGCCAAA TATTGGTTAC
ACAAACCATT GGGTTGACTA CTCTGCGTTA AATATTAAGG AAGACGCTGA CTTAGTTGAT
AATATGCGCG AAGTTTATCG ATTTGGCTTT GGTAAAAATA CTGCAAAAGC CGGAAATCCT
GTGGATCGCG AAGAATGGCA GATGACTCCG CAAACTGTGA ACGCTTACTA CGATCCTCTG
CTGAACGTAA TCGTGTTCCC TGCTGCAATT TTGCAACCAC CATTCTTTAA CCCAAGCGCT
CCAGACGCAG CAAATTACGG CGCTATTGGT GCAGTGATTG GCCACGAAAT CGGCCACGGT
TTTGACGACC AAGGTTGCGA ATACGACGGC GACGGCATGC TTAACAATTG GTGGACTGAA
GAAGACAAAA CCAACTTCAC TGAGCGCACT AAGAAGCTTA TTGAACAATA CAATGCTTTC
ACACCAACGC AGCTTATTGT TAAGTACTCT CACTTAAAGA GCAAAGAAGA GCGCAATGCG
ATGCCTCACG TAAACGGTGC TTTAACAATC GGCGAAAATA TTGGCGATTT AAGCGGCGTG
ACTATTGCGC TTAAAGCATA CGCTTTCGCC TTGCAAAAGA GCAAGGGACA AGAAATCGAC
GGAAGTGAAG ATGCGATTCG CGAAACCTTG CTGAACGCTC CTGAAGTAGA TGGTTTCACT
GCTTTGCAGC GATTCTTCTT AAGCTACGCG TTAGTATGGC GTTCCAAGGC TCGTAATGAA
ATTGCGGAAC AGCTGCTTCA AATCGACCCA CACTCACCAG CCGAATGCCG CACTAACGGC
ATTGCTCGAA ACGTAGACTT GTTCTACGAT GCTTTCGACG TTAAAGAAGG CGACGAGATG
TGGCTCGACC CTGCTGAGCG CGCACACATT TGGTAA
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| Protein sequence | MSNNNNNSNN KESQKEISAV DFDPASFSSA TRPQDDLFRY VNGPWIDTYT LPEDKPMYGA
FHKLAEDAEK QIRDILENEN CPAKKSQTLY RNYLDTASIE KAGITPIKGD LDAVDSAETK
EDLVRTIGAL NPYGGPDAMF YFGVYGDPKD PKTNIMHIEQ SGLGLPDEAY YREDNYAPIR
TEYVKMVASL LRLAGYGDAT TTQAQAERFL NVETKIASYH WDNVATRDSQ KTYNPYNYAD
LAKTLEALNL DAFLDATQKA YDNCEEATNQ PINLREAFNK VVVHEPSFME GLNKIWQEAD
LEDLKLWARV HVILRWASLL SEDFAQARFD FYGKVLSGAT KQRDRWKRAV GVVDDACGEE
VGREYVRLHF PESSKEYMQG LVDNLINAYR ESISHSSWLG EETKAKALEK ISKFEPNIGY
TNHWVDYSAL NIKEDADLVD NMREVYRFGF GKNTAKAGNP VDREEWQMTP QTVNAYYDPL
LNVIVFPAAI LQPPFFNPSA PDAANYGAIG AVIGHEIGHG FDDQGCEYDG DGMLNNWWTE
EDKTNFTERT KKLIEQYNAF TPTQLIVKYS HLKSKEERNA MPHVNGALTI GENIGDLSGV
TIALKAYAFA LQKSKGQEID GSEDAIRETL LNAPEVDGFT ALQRFFLSYA LVWRSKARNE
IAEQLLQIDP HSPAECRTNG IARNVDLFYD AFDVKEGDEM WLDPAERAHI W
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