| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1059 |
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| Symbol | |
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| ID | 8708829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1206708 |
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| End bp | 1207646 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646483151 |
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| Product | pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 |
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| Protein accession | YP_003374262 |
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| Protein GI | 283783508 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0214] Pyridoxine biosynthesis enzyme |
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| TIGRFAM ID | [TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.151871 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGCTG AGAACTTGAA TACTACGGTA ACTGTGAACG AATCCTCGGA TCCGCAAAAC
AAAAGCGGCG AAGACCGTAC AGCATTGAAC CGTCAACTGG CACAAATGCT TAAAGGCGGC
GTGATTATGG ACGTCACCAC CCCAGAGCAG GCACGAATTG CTGAAGATTC TGGCGCATGC
GCAGTTATGG CTTTGGAGCG TATTCCTGCC GATATTCGTG CAGCAGGCGG CGTTTCTCGT
ATGAGCGACC CGGCTATGAT TCACAGCATT CAAGAGGCTG TGTCTATTCC TGTTATGGCA
AAATGCCGTA TCGGTCACTT TGTTGAAGCA CAAGTGCTTG AGGCTATCGA GATCGACTAC
ATCGACGAAA GCGAAGTGCT TTCTCCAGCC GACGACGTGT ATCACATCAA TAAGCGCGAT
TTTGCTGTGC CTTTCGTTTG CGGCGCTAAG GATTTGGGTG AAGCTTTGCG CAGAATCAAC
GAAGGCGCTT CCATGATTCG CACTAAGGGC GAGCCTGGAA CTGGTGACGT GATTCAAGCT
GTGCGTCACA TGCGTATGAT GAATTCCGCA ATTCGTAAGC TTACAAGCAT GCGCGAGGAT
GAGCTTTTTG AAGAAGCCAA AAATTTGCGC GTGCCTTTCG AACTCGTAAA ATACGTTGCA
CAAAACGGCA AGCTCCCTGT TGTTAACTTC GCAGCCGGCG GCGTTGCTAC CCCAGCCGAC
GCTGCTTTAA TGATGCAGCT TGGTGCCGAA GGCGTATTCG TTGGCTCCGG TATCTTTAAG
TCTGGAGACC CGGCAAAGCG TGCTGCAGCA ATCGTTAAAG CTGTAACTAA TTACAAGGAC
GCCAAGATGA TTGCTAAGCT TTCCGAAAAC TTGGGCGAAG CTATGGTTGG CATTAACGAG
CAGGAAATCA AGCTTTTAAT GGCTGAGCGA GGCGAGTAA
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| Protein sequence | MMAENLNTTV TVNESSDPQN KSGEDRTALN RQLAQMLKGG VIMDVTTPEQ ARIAEDSGAC
AVMALERIPA DIRAAGGVSR MSDPAMIHSI QEAVSIPVMA KCRIGHFVEA QVLEAIEIDY
IDESEVLSPA DDVYHINKRD FAVPFVCGAK DLGEALRRIN EGASMIRTKG EPGTGDVIQA
VRHMRMMNSA IRKLTSMRED ELFEEAKNLR VPFELVKYVA QNGKLPVVNF AAGGVATPAD
AALMMQLGAE GVFVGSGIFK SGDPAKRAAA IVKAVTNYKD AKMIAKLSEN LGEAMVGINE
QEIKLLMAER GE
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