| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1055 |
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| Symbol | |
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| ID | 8709054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1200775 |
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| End bp | 1202457 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483147 |
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| Product | putative phosphonate C-P lyase system protein PhnK |
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| Protein accession | YP_003374258 |
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| Protein GI | 283783504 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.573369 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTAA ATATTCAAAA TCTCACGCTA AAACTTGGCG GAAAACTAAT TCTTGACAAC
GTATCAATTG AGATTTCTGA CGGTGAGCGT GTTGGCTTAG TTGGTTCTTC TGGCTCTGGC
AAATCTATGC TAATTCGAGC TATAACTGGA TTATTGCCGT CAAATGCTGA AATTTCAGGC
TCTTGTATGC TTGGCAATCT TCAAACAGTG AAAGCAAAAG ATGAAAATTT AGCTTCTATT
CGTGGAAAAT ACGTTGGTGT AGTATTTCAG CAAGCTAATA GAGCGCTTAA TCCAATGTTA
AGCGTTGAAA AACAAATTTC TTTGCCTTTG CGAATACATT ACAATCTAGA TGATGACGAT
ATTCACAATC GAGTATGCAT GATGCTTGAA AAAGTAGGGT TGTCGAAAAA TCTCGCATCT
CAACGCACGT TTGAGCTTTC TGGAGGTCAA CAGCAGCGAG TTGGTATTGC TACAGCTTTG
ATCACCTCTC CGCGTTTGAT TTTGGCTGAT GAGCCTACTA CTGCGCTTGA CTCGGTTACA
CAAAGTGAAG TTGTGCGAAT GCTTGCTTCA CTTGTAGATG ATATGGGCGC TTCAATGCTT
TTTGTAACGC ACGATTTTTC TGTGCTTTCG CATGCTGCTA ATCGTTGCTA TGTGCTCGAT
TCTGGGCGTG TGGTCGATAG TGAAAATGTT AAGAATTTGC TTGATAATCC GCGTATTTCT
TCTACTAAAC AATTAGTGAG TGCTGCTAAA AAGTTGACTT TTAGAGCGCA AAATTTGGGT
TCTAAAAATT TAGATTCTGC AAAAGTGGGT TCTGCAAATA CTGGTTCTGC AAACGTTGAT
TCTGAAAACG CTGATTTTAA GAAATTTAAT TCCCATATTG GCAACAGTGA AGAAAATTCG
CTTATAAATG CAAAAAATAT TCACGTTACT TTAGGTCGAG CAAAAACTCG TGCTGAAGTG
TTAAGCGGTG TAGATTTACA TCTTAATATT GGCGAATCTT TGGCGATTAT TGGCGGATCT
GGTTCCGGCA AAACAACTCT TATACGCGCT ATGTTGGGGC TTGAAACTCT TTGCGAAGGT
AACGTTACTT ATTGCGGTGA AATCGTAAAT AATGCAAATT TATTAGAAGT AAATAAAAAT
GCTTGTACGC TTATGAGACG CGAATCGTCG CTTGTATTTC AGCATCCGTT TGCTGCATTG
GATCCACACT GGACAGTTCA AAAAAGTGTT GCTGAGCCTC TTAGAATATG GCGAAAATCG
CTTAAATTAG ACGATGCAAC TATTGAGCAG CGTGTTTGCG AAATGTTGAA ATTAGTAGGC
TTAAAACCTG AAGATTTTTT GGAACGTCAC CCTCACGAGC TTTCTGGCGG TCAAGCGCAA
TGTGTTTGTA TTGCTCGCGC CTTAATTAAT AATCCTCGAG TTTTGCTTGC TGACGAGCCT
ATGAGTGCAA TTGACGTTGC TGAAAGAACT CGCATTTTAG ACGCTTTTGC GTCCATTCGC
TCCGAGCGTA AAAGCATGTC ATGCATATTT GTAAGTCATG ATTTGGGTAT GATCCGGCAT
TTAGCAACGC GAGTTATTGT TCTTAATGAA GGAAAAGTTG TGGAATGTGG CAGTGTAAAT
GATGTGCTCA ATAATCCACA AAATGACTAC ACTCGTGCTC TTGTAAACGC AGCAATCATG
TAA
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| Protein sequence | MSLNIQNLTL KLGGKLILDN VSIEISDGER VGLVGSSGSG KSMLIRAITG LLPSNAEISG
SCMLGNLQTV KAKDENLASI RGKYVGVVFQ QANRALNPML SVEKQISLPL RIHYNLDDDD
IHNRVCMMLE KVGLSKNLAS QRTFELSGGQ QQRVGIATAL ITSPRLILAD EPTTALDSVT
QSEVVRMLAS LVDDMGASML FVTHDFSVLS HAANRCYVLD SGRVVDSENV KNLLDNPRIS
STKQLVSAAK KLTFRAQNLG SKNLDSAKVG SANTGSANVD SENADFKKFN SHIGNSEENS
LINAKNIHVT LGRAKTRAEV LSGVDLHLNI GESLAIIGGS GSGKTTLIRA MLGLETLCEG
NVTYCGEIVN NANLLEVNKN ACTLMRRESS LVFQHPFAAL DPHWTVQKSV AEPLRIWRKS
LKLDDATIEQ RVCEMLKLVG LKPEDFLERH PHELSGGQAQ CVCIARALIN NPRVLLADEP
MSAIDVAERT RILDAFASIR SERKSMSCIF VSHDLGMIRH LATRVIVLNE GKVVECGSVN
DVLNNPQNDY TRALVNAAIM
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