Gene HMPREF0424_1053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1053 
Symbol 
ID8709297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1199570 
End bp1200109 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content40% 
IMG OID646483145 
Producthypothetical protein 
Protein accessionYP_003374256 
Protein GI283783502 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.4766 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGATA TAACATTGAG AAAAGCAACT CTTGGTGACT TGCGAAATAT TGAGCATATT 
TATGAAAATG CTCGCAAATT TATGCGTGTT ACAGGCAATC CTCATCAGTG GGGGAATAGT 
TTTCCACTTG TTTCAAGTGT TATTGAGGAT ATTCGTTTAA AACGTTTCTA TTTGATTGTT 
GACGAGGACC CAGAATCATG TAACGAGCGT ATTCTAGCGC AATTCGCATT ATGCGAAGGT 
GTTGATGAAG TGTATGCCAG TATTGACGGT GCGTGGCTTG ATGATATTTC CCCCTATGTA 
ACAATTCACC GCTTAGCATC TTCGGGAATA AAACCAAAAA TGGCAACAGC GTGCTTGCAT 
TGGGTGCAGC AAAACTATAA TAATGTACGC ATTGACACGC ATCCAGATAA CGTAATTATG 
CAAAAAGTAA TTACGCGTGC AGGGTTTAGT CGTTGTGGAT TGGTCGTTAT TCCAGATCGT 
GCACACAGTG CAGTACGTAT TGCATACCAA TGGGTGCAAA CACTTAATCA TGTCATATGA
 
Protein sequence
MEDITLRKAT LGDLRNIEHI YENARKFMRV TGNPHQWGNS FPLVSSVIED IRLKRFYLIV 
DEDPESCNER ILAQFALCEG VDEVYASIDG AWLDDISPYV TIHRLASSGI KPKMATACLH 
WVQQNYNNVR IDTHPDNVIM QKVITRAGFS RCGLVVIPDR AHSAVRIAYQ WVQTLNHVI