Gene HMPREF0424_1015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1015 
Symbolprs_1 
ID8710047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1145002 
End bp1146036 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content46% 
IMG OID646483108 
Productribose-phosphate diphosphokinase 
Protein accessionYP_003374221 
Protein GI283783467 
COG category[E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism 
COG ID[COG0462] Phosphoribosylpyrophosphate synthetase 
TIGRFAM ID[TIGR01251] ribose-phosphate pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGGAG ATATGGTGAG CATCGTCCTT GAAGGAAAGC CAGATAAAAA CCTTGTTCTC 
GTTACCGGTC GCGCACATCC GAAGCTTGCT CGTGATGTAG CTGATCAGCT TGGAATTGAT
GTACTTGAAA CTACGGCATA CGATTTTGCT AATGGTGAAA TGTATGTTCG CTATACGCAA
TCTGTGCGTG GTACAGATGT ATTCGTGCTT CAAAGCCACA GTGATCCTGT TAACAAGTCC
ATTATGGAAC AGTTAATTAT GATTGACGCT TTGAAGAGGG CTTCTGCTCG TTCAATTACT
GCAGTATGCC CGTTGCTTGG TTATTCTCGA CAAGATAAAA AGCATCGCGG TCGCGAACCT
ATTTCTTGCC GCTTGATGTT TGATTTGCTA AAGACTGCTG GTGCTGATCG CATTATGAGC
GTCGATTTGC ATGCAGCTCA GTCTCAAGGA TTCTTCGACG GTCCTGTTGA TCACTTGATT
GCTATGCCAG TTTTGGTTGA TTACGTACGT GATCGTTTCC GCGATGATCT TGCAAACGTA
ACTGTTGTGT CTCCTGATGC TGGTCGTATT CGCGTAGCAG AACAGTGGGC TCAGCGCTTA
GGTGGCGGTC CTTTGGCTTT TGTGCACAAA ACTCGCGATA TCACTTGCCC TAATAAGACG
GTTGCAAATC GCGTCGTTGG TGACGTTGCT GGACGCGATT GCGTTATGGT TGACGACTTG
ATCGATACTG CAGGAACTAT TGCAGGAGCT TGCAATGTGT TGAAGGAAGC TGGAGCTAAG
TCTGTTACAG TTGTTGCAAC TCACGGCGTG CTTTCTGGTC CTGCAGTCGA ACGTTTGAAA
TCTTGTGGTG CTAGGGAAGT TGTTTTGACT GATACTGTGC CTATTCCAGA AGAGAAGCGT
TGGGATGGTT TGACTGTTCT TTCAATTGCT CCGCTTCTTG CAAGTGCTAT TAAAGCAGTG
TTTGAGGATG GTTCGGTTGC TAAGCTTTTT GACACTTATC CTGAGCATCA CGGACAAGGA
TTCTTATTTG CTTAA
 
Protein sequence
MFGDMVSIVL EGKPDKNLVL VTGRAHPKLA RDVADQLGID VLETTAYDFA NGEMYVRYTQ 
SVRGTDVFVL QSHSDPVNKS IMEQLIMIDA LKRASARSIT AVCPLLGYSR QDKKHRGREP
ISCRLMFDLL KTAGADRIMS VDLHAAQSQG FFDGPVDHLI AMPVLVDYVR DRFRDDLANV
TVVSPDAGRI RVAEQWAQRL GGGPLAFVHK TRDITCPNKT VANRVVGDVA GRDCVMVDDL
IDTAGTIAGA CNVLKEAGAK SVTVVATHGV LSGPAVERLK SCGAREVVLT DTVPIPEEKR
WDGLTVLSIA PLLASAIKAV FEDGSVAKLF DTYPEHHGQG FLFA