Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1015 |
Symbol | prs_1 |
ID | 8710047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1145002 |
End bp | 1146036 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646483108 |
Product | ribose-phosphate diphosphokinase |
Protein accession | YP_003374221 |
Protein GI | 283783467 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0462] Phosphoribosylpyrophosphate synthetase |
TIGRFAM ID | [TIGR01251] ribose-phosphate pyrophosphokinase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGGAG ATATGGTGAG CATCGTCCTT GAAGGAAAGC CAGATAAAAA CCTTGTTCTC GTTACCGGTC GCGCACATCC GAAGCTTGCT CGTGATGTAG CTGATCAGCT TGGAATTGAT GTACTTGAAA CTACGGCATA CGATTTTGCT AATGGTGAAA TGTATGTTCG CTATACGCAA TCTGTGCGTG GTACAGATGT ATTCGTGCTT CAAAGCCACA GTGATCCTGT TAACAAGTCC ATTATGGAAC AGTTAATTAT GATTGACGCT TTGAAGAGGG CTTCTGCTCG TTCAATTACT GCAGTATGCC CGTTGCTTGG TTATTCTCGA CAAGATAAAA AGCATCGCGG TCGCGAACCT ATTTCTTGCC GCTTGATGTT TGATTTGCTA AAGACTGCTG GTGCTGATCG CATTATGAGC GTCGATTTGC ATGCAGCTCA GTCTCAAGGA TTCTTCGACG GTCCTGTTGA TCACTTGATT GCTATGCCAG TTTTGGTTGA TTACGTACGT GATCGTTTCC GCGATGATCT TGCAAACGTA ACTGTTGTGT CTCCTGATGC TGGTCGTATT CGCGTAGCAG AACAGTGGGC TCAGCGCTTA GGTGGCGGTC CTTTGGCTTT TGTGCACAAA ACTCGCGATA TCACTTGCCC TAATAAGACG GTTGCAAATC GCGTCGTTGG TGACGTTGCT GGACGCGATT GCGTTATGGT TGACGACTTG ATCGATACTG CAGGAACTAT TGCAGGAGCT TGCAATGTGT TGAAGGAAGC TGGAGCTAAG TCTGTTACAG TTGTTGCAAC TCACGGCGTG CTTTCTGGTC CTGCAGTCGA ACGTTTGAAA TCTTGTGGTG CTAGGGAAGT TGTTTTGACT GATACTGTGC CTATTCCAGA AGAGAAGCGT TGGGATGGTT TGACTGTTCT TTCAATTGCT CCGCTTCTTG CAAGTGCTAT TAAAGCAGTG TTTGAGGATG GTTCGGTTGC TAAGCTTTTT GACACTTATC CTGAGCATCA CGGACAAGGA TTCTTATTTG CTTAA
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Protein sequence | MFGDMVSIVL EGKPDKNLVL VTGRAHPKLA RDVADQLGID VLETTAYDFA NGEMYVRYTQ SVRGTDVFVL QSHSDPVNKS IMEQLIMIDA LKRASARSIT AVCPLLGYSR QDKKHRGREP ISCRLMFDLL KTAGADRIMS VDLHAAQSQG FFDGPVDHLI AMPVLVDYVR DRFRDDLANV TVVSPDAGRI RVAEQWAQRL GGGPLAFVHK TRDITCPNKT VANRVVGDVA GRDCVMVDDL IDTAGTIAGA CNVLKEAGAK SVTVVATHGV LSGPAVERLK SCGAREVVLT DTVPIPEEKR WDGLTVLSIA PLLASAIKAV FEDGSVAKLF DTYPEHHGQG FLFA
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