| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0956 |
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| Symbol | |
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| ID | 8709346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1098195 |
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| End bp | 1099166 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483051 |
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| Product | site-specific recombinase, phage integrase family |
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| Protein accession | YP_003374166 |
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| Protein GI | 283783412 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCACCTC AAGAGGTAAA AAGACGCGAA ATAGCAGAAC ACACAACGCT AGACGCGTAC
TTTCCTGAAT GGCTTGAAAA ACGGCGCGTG CGCGGCAAAC CGCTTAAAGA TAGCACAAAA
TACGCGACAA CGAAAACGTA TGAGAATCAT ATTAAACCGG TGCTTGGTAG TGTTGCGCTC
GCAGACTTGA GTACGCAAAT GGTAAACGAT TTTAGAGACG GCTTGGACGC GGCGCAACCG
GACATGGTAC GCAACACTAT GAAAGTATTG CGCGCTATTG TAAACAGTGC GCTGCGACCG
GATATTAACG GCAATCCGCC AATCTTGAAG AATAATCCGT TTACTGTTAG TGAAGCTAAA
GTTGAGCGTC GCCATGAGAT AACAATCGCA ACACCTGAAG AAGTTAAAAC AATATACAGT
ATGATGCCTG ACTCTTACGC GCCTACTGTT CTGCTAGCTT CGCTTGGAGC GTTTCGTATT
GGTGAGATTT GCGCGCTCAA GGTCAGTGAT ATTGATTTCA AGCATAATAC GGTTACGATC
AGTAGGACGC GCGCGACTAC CCCTAACTCG ACTGTGCTGA CGACCGCACC GAAAACTGAG
CATAGTAATC GTAGTGAGGT GATACCAGTC TCGCTGGTTG ATGGTTTAAA AGAGTTCGTG
AAAAAGCAAG AGTTAAGCAA GGATGATTGG CTGTTTCCTA TGAGAACAGA TAGGACAACG
CCTATCCGTA CGAATACGCT ACGAGATTAC TATGATAAGG CTAGGCTTGC TGCGAACCGT
CCTGACTTGC ATTTCCATGA TTTACGCCAT ACGTGCTTGA CGTGGCTTGC ACAAAGCGGA
GCGACTGTTA AAGAGCTAAT GGATATGGCT GGTCATGCTG ACCCGAAGAT TGCAATGATT
TACCAGCATG CGGCGGATGA GAGACGGCGC TCGCAAGCTG AAACGCTTGG CGGCAGGCTA
TTTGGAGAGT AA
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| Protein sequence | MPPQEVKRRE IAEHTTLDAY FPEWLEKRRV RGKPLKDSTK YATTKTYENH IKPVLGSVAL
ADLSTQMVND FRDGLDAAQP DMVRNTMKVL RAIVNSALRP DINGNPPILK NNPFTVSEAK
VERRHEITIA TPEEVKTIYS MMPDSYAPTV LLASLGAFRI GEICALKVSD IDFKHNTVTI
SRTRATTPNS TVLTTAPKTE HSNRSEVIPV SLVDGLKEFV KKQELSKDDW LFPMRTDRTT
PIRTNTLRDY YDKARLAANR PDLHFHDLRH TCLTWLAQSG ATVKELMDMA GHADPKIAMI
YQHAADERRR SQAETLGGRL FGE
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