Gene HMPREF0424_0937 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0937 
Symbol 
ID8709235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1077685 
End bp1078728 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content49% 
IMG OID646483034 
Productputative glycoprotease GCP 
Protein accessionYP_003374150 
Protein GI283783396 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0533] Metal-dependent proteases with possible chaperone activity 
TIGRFAM ID[TIGR00329] metallohydrolase, glycoprotease/Kae1 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAG CAATCGTATT GGGAATTGAA TCAACTTGCG ACGAAACTGC CGCAGCTATT 
GTGCGCGGAC GCACGCTGGT GTCAAATGTG GTGGCATCTT CAATGCAAGA GCATGCGCGC 
TACGGCGGTG TGATTCCAGA AATTGCTTCT CGTGCGCACG CTGAAGCTTT TGTGCCGGTT 
GTTTCTAAAG CTTTAGCAGA CGCAAACATG GATTTAAGCG ATGTTGACGC GATTGCAGTA 
AGCGCAGGTC CTGGTCTTGC TGGCTGCTTA GCTGTGGGAG TTTCGGGAGC TAAAGCATTA 
GCTTGGGCTG CAAATAAGCC GATTTATGGT ATTAATCATG TAATTGGGCA TATTGCAGTA 
ACGCAATTGC AATTCGGCGA TGTGCCGGAA GATGTTCTCG CTTTAATTGT TTCCGGCGGT 
CACACTTCGC TTCTTCACGT GAACGATATT GCTAAAAGTA TTGACGTTGT TGGCACAACT 
TTGGACGATG CTGCCGGCGA GTGCTTTGAT AAGGTTGCGC GATTGCTTGG ATTCCCATAC 
CCGGGTGGTC CTCATATTGA TAGGCATGGA AGGCTTGGAA ATCCGGATAC TTTGAAAGTT 
CCGCAAGGTT TAACGCAAGG TCGTTCCGGC AAAGAGCATC CGTACGATTT CAGCTTCTCG 
GGTGTAAAAA CTGCTGTTGC TCGTTGGGTT GAAGCGCGTG AAGCTCAGGG TCTTGAAATT 
CCAGTTGATG ACGTGTGTGC TTCTTTGGCT AATTCTGTGG CGGAAGTGCT TTCTAGAAAA 
GCTATGATGG GCTGCGAGCA GTACGGTTCT AAAACGTTGA TGATTGGCGG CGGATTCTCT 
GCTAACTCGC AGCTTCGTGA GCATTTGCTG GCTTGCGGCG AGGAGCATGG AATTGAAGTG 
CGTTTGCCAG AGCTTAAGCT TTGCACAGAT AACGGTGCGA TGGTTGCAAT GCTTGGTGTG 
AATTTGGTAG AAGCAGGAGT TCGTCCTTCT TCTCCTGATT TTGCAATCGA TTCTGCAATG 
CCTCTTACCA CTGTGAGCTT ATAA
 
Protein sequence
MSEAIVLGIE STCDETAAAI VRGRTLVSNV VASSMQEHAR YGGVIPEIAS RAHAEAFVPV 
VSKALADANM DLSDVDAIAV SAGPGLAGCL AVGVSGAKAL AWAANKPIYG INHVIGHIAV 
TQLQFGDVPE DVLALIVSGG HTSLLHVNDI AKSIDVVGTT LDDAAGECFD KVARLLGFPY 
PGGPHIDRHG RLGNPDTLKV PQGLTQGRSG KEHPYDFSFS GVKTAVARWV EAREAQGLEI 
PVDDVCASLA NSVAEVLSRK AMMGCEQYGS KTLMIGGGFS ANSQLREHLL ACGEEHGIEV 
RLPELKLCTD NGAMVAMLGV NLVEAGVRPS SPDFAIDSAM PLTTVSL