Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0927 |
Symbol | pyrB |
ID | 8709869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1058850 |
End bp | 1060085 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646483025 |
Product | aspartate carbamoyltransferase |
Protein accession | YP_003374141 |
Protein GI | 283783387 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAACG CAATTTCTAG TTCTTTACAT CAAACTTTTT CTCGCAGCAC AATTGCAAAT TCTCTAGCTG GCAAAAGTGT TGTTACATTA GACGATATTT CAACTGCGCA AATACGAATG CTTTTAGACA AAGCGCGATA CATTGATTCG CACCGTAAAG AAGTGGCTCA CACTTGCGAT GGCAGAGTGT TGGCCACTCT TTTTTATGAG CCGAGCACGC GCACTCGCTT AAGCTTCGAA ACAGCAATGC TGCGTTTAGG CGGAAAAGTA ATCGGTTTTG CAGGTGCGCA ACTTTCCAGC GCGAGCAAAG GTGAGACTGT AAACGATACT TTGAAAGTCG TGTCTAACTA TGTCGATGTT GTTGCAATGC GTCACCCAAA GGAGGGTGCT GCTTTTGTTG CAACGCAAGC TGTGAGCACG CCTATTATTA ACGCTGGCGA CGGCGGTCAC ATGCACCCAA CTCAAACTCT TGCAGACTTG GCAACGATTC TTGCGCGTTT CGGCCGCCTT AATAATCTCA CTGTCGGCTT GTGCGGCGAC TTAACATATG GTCGCACGGT TCACTCGCTT ATTGAAACTT TGTGCCGCTT TGGAAACGTT CATTTTGTGC TGATTAGCCC GGATGAGCTT AAAACTCCGC AGTACGTAAT CGACCGTATT ATTGACACTC CTTCGTGCAC TTATGAAGAA ACTCGCGACT TGATGGAAGT TATTGGCAAG CTTGACGTGC TTTACATGAC TCGCGTGCAA GAAGAACGTT TTACGGATCG CGAGCAATAC TTGCGACTTC GTGACACGTA CATTTTGACT GAAGAAAAAT TGCAAAAAGC AAAGTCGCAT ATGCCTGTGC TGCATCCGCT TCCTCGAATT AACGAGATTG CTGTTGATGT TGACGACGAT CCGCGCGCAG CATACTTTGA GCAGGTTAAA AACGGTATGC TTATGCGTAT GGCTTTGGAA AGTTCCGTTC TTGGCGACGA GCTTTGCGGC TACGGGCCAA CTGATTTTGT GAACGTTCCA GAAGACGAAT TGCAAGCGGT TGATGCACAC GGAATTTCAT TAACGGATCC TCGCGTTCAC ACAACCGACG AGAATGCGCC TGAAACTCTT ACATGCCCGA ATCCTCGTTG CATAACAAAC AGCGAACTAA CTCTTAAACG CAAGTTCTAC AAAGCTGATT CCGTAAGGCA CGAGTATCGC TGCATGTATT GCGACGAAGA AGCAGAAACT AAGTAA
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Protein sequence | MTNAISSSLH QTFSRSTIAN SLAGKSVVTL DDISTAQIRM LLDKARYIDS HRKEVAHTCD GRVLATLFYE PSTRTRLSFE TAMLRLGGKV IGFAGAQLSS ASKGETVNDT LKVVSNYVDV VAMRHPKEGA AFVATQAVST PIINAGDGGH MHPTQTLADL ATILARFGRL NNLTVGLCGD LTYGRTVHSL IETLCRFGNV HFVLISPDEL KTPQYVIDRI IDTPSCTYEE TRDLMEVIGK LDVLYMTRVQ EERFTDREQY LRLRDTYILT EEKLQKAKSH MPVLHPLPRI NEIAVDVDDD PRAAYFEQVK NGMLMRMALE SSVLGDELCG YGPTDFVNVP EDELQAVDAH GISLTDPRVH TTDENAPETL TCPNPRCITN SELTLKRKFY KADSVRHEYR CMYCDEEAET K
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