| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0892 |
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| Symbol | thiC |
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| ID | 8709229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1012629 |
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| End bp | 1015286 |
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| Gene Length | 2658 bp |
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| Protein Length | 885 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482991 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_003374107 |
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| Protein GI | 283783353 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC
[TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCGA ATTATCCGTA CGCATCAATG CGTAATCAAT TTAATCTAAG CGCCTGCTTT
ATTGCAGACC CACAAGCTTG TAATAATCGT CCGCTTACCG ATATTGTCGA TGATGCTTTG
CGCGCTGGAG CGACTTTTAT TCGTCTTCAT TGCAACAATG AAAACGCTAA AGAAATCACT
ACTATTGCAC GCGATATTGC ACAAATCATC GAAGACAATA ACAAATGCGA TTCTGTAACT
TTTGTTATCG ACGAGCGTGT TGATGTCGTT TGGCAAGCTC GCAATCAAAG CATCAAAGTT
GACGGAGTGC ATTTAGCACA AAGCGACATG GAGCCTAGAG AGGCTCGCGC TCTTCTTGGC
GAAGATGCTG TAATCGGCTT ATCTGTTGAA ACCGAAAGCT TAGTTAAAGT AATAAACGAA
CTTCCAGATG GATGCATTGA TTACATTTGC GTAACAGCAA TGCGCAATCC TGAAGAAGGA
TGCGAAAGCA CTACTGCCGC TTACGAATTG GAAGCAAATC ACACAACGCT GGACGAAGCG
AAAATTAATA CGATTTGTTC CGCAAGTGAT TTTCCAGTTC TAGTTGGCGG AAGAACTGCA
CTCGACGATA TCGATACAAT CGCTCACACC AAGGCTGCAG GATGGTTCGT TTCTGAAGCA
TTGTATTCTT CAGAAACACC AGAATCAACT ATGCGTGAAT TTGTTGAACA TTGGAAAGCT
GTGCGAGGTG AAGAAAAGCA CGGCTACGCT AAGCGAGTGA TAGTTGCAGA AAATTCTGAA
TCAAAATCTT CAGAAACTCA AGAAAAGAAG CCAACTTTTA TTAATGCGAA AGAAGCAAAG
GATGCTGCGA AATTAGCTAA ACAACAGCGA GTTGACATTG CAGCTCGCGG ATGCACTCAG
CGCGATAAAG CTCATATTCG CAAAACAACT CCAATTCATT TTGAGTATGA ATATGGTTCT
TATGATTTGG AAGTTCCTTA TACGGAAATT AAGCTTTCGG ATACTCCTGG CGTAGGTCCT
AACCCGCCTT TTAAGGATTA CAATACAGAA GGTCCAAAGT GCGATCCGAA GGAAGGTTTG
GCTCCGCTTC GCCTTGACTG GATTCGCGAC CGCGGTGACG TTGTGGAATA TGAGGGTCGC
AGGCGCAATC TTCAAGACGA CGGCAAGCGC GCAATTAAGC GAGGCAAAGC TTCTAAAGAA
TGGCGTGGAC GCACGCATAA GCCAATGAAG GGCGCGGATC ATCCGATTAC ACAAATGTGG
TACGCTCGCC ACGGAATCAC TACTCCGGAA ATGCAATATG TTGCAACGCG CGAAAATTGC
GATGTAGAGC TGGTTCGCGA AGAAGTTGCA GCCGGACGTG CTGTAATTCC TTGCAATATT
AACCATCCTG AAGCTGAACC TATGATTATT GGCTCGCGCT TCTTGACTAA GCTCAACGCA
AACATGGGTA ATTCTGCTGT TACGTCATCT ATCGACGAAG AAGTAGAAAA GCTTACGTGG
GCCACGAAGT GGGGTGCGGA TACCGTTATG GATCTTTCCA CCGGTAACGA TATTCACACA
ACGCGCGAAT GGATTTTGCG CAACTCCCCT GTGCCAATTG GAACAGTGCC AATGTATCAG
GCTTTGGAAA AGGTTGAGGA TGATGCTTCT AAGCTCAGCT GGGAGCTTTT CCGCGACACT
GTTATTGAGC AGTGCGAGCA GGGCGTTGAC TACATGACTA TTCACGCTGG CGTGCTTCTT
CGCTACGTGC CGCTTACTGC AAACCGCGTA ACCGGTATTG TTTCTCGTGG TGGCTCAATT
ATGGCTGAAT GGTGCTTGCA ACATCATCAA GAGAGCTTCT TGTATACGCA CTTTGAAGAA
TTATGCGAGA TTTTCGCAAA GTACGATGTT GCATTCTCTT TGGGTGATGG TTTGCGTCCA
GGTAGCTTGG CTGATGCTAA CGATGCGGCT CAGCTTTCCG AGCTTATGAC GCTTGGCGAG
CTTACGAAGA TCGCTTGGAA GCATGACGTA CAGGTGATGA TTGAAGGTCC TGGTCACGTG
CCATTCGACA CTGTGCGTAT GAATATTGAG ATGGAAAAGG CAATTTGCCA GAATGCTCCA
TTCTATACGC TTGGTCCTTT GACTACGGAT ACCGCACCTG GCTATGACCA CATTACTTCC
GCAATTGGTG GCGTGGAGAT TGCGCGATAC GGCACCGCAA TGCTTTGCTA TGTGACTCCT
AAGGAACATT TGGGGTTGCC TAACAAGGAT GACGTGAAGC AAGGCGTGAT TGCGTATAAG
ATCGCTTGCC ACGCAGCTGA TCTTGCTAAG CATCATCCAC ATGCTATGGA TCGCGACAAC
GCAATCAGTA AGGCTCGCTT TGAGTTCCGC TGGTTGGATC AGTTCAACTT AAGCTATGAT
CCAGATACCG CAATCGCCTT CCACGACGAA ACACTTCCTG CAGAACCAGC AAAAATGGCG
CACTTCTGCT CGATGTGCGG ACCAAAGTTC TGCTCGATGG CTATTTCGCA AAATATTCGT
AAGCGTTTTG GCGGAGCAGC TCAGCAGGAG CAGCTCGTTG AAGAAGCACG CAGTCAGGCA
ATTGCCGATG GTATGAAAGA GATGAGCAAA AAGTTCCAAG AATCCGGCTC ATCGTTGTAT
CAAAGCGTGA AAGCATAA
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| Protein sequence | MTSNYPYASM RNQFNLSACF IADPQACNNR PLTDIVDDAL RAGATFIRLH CNNENAKEIT
TIARDIAQII EDNNKCDSVT FVIDERVDVV WQARNQSIKV DGVHLAQSDM EPREARALLG
EDAVIGLSVE TESLVKVINE LPDGCIDYIC VTAMRNPEEG CESTTAAYEL EANHTTLDEA
KINTICSASD FPVLVGGRTA LDDIDTIAHT KAAGWFVSEA LYSSETPEST MREFVEHWKA
VRGEEKHGYA KRVIVAENSE SKSSETQEKK PTFINAKEAK DAAKLAKQQR VDIAARGCTQ
RDKAHIRKTT PIHFEYEYGS YDLEVPYTEI KLSDTPGVGP NPPFKDYNTE GPKCDPKEGL
APLRLDWIRD RGDVVEYEGR RRNLQDDGKR AIKRGKASKE WRGRTHKPMK GADHPITQMW
YARHGITTPE MQYVATRENC DVELVREEVA AGRAVIPCNI NHPEAEPMII GSRFLTKLNA
NMGNSAVTSS IDEEVEKLTW ATKWGADTVM DLSTGNDIHT TREWILRNSP VPIGTVPMYQ
ALEKVEDDAS KLSWELFRDT VIEQCEQGVD YMTIHAGVLL RYVPLTANRV TGIVSRGGSI
MAEWCLQHHQ ESFLYTHFEE LCEIFAKYDV AFSLGDGLRP GSLADANDAA QLSELMTLGE
LTKIAWKHDV QVMIEGPGHV PFDTVRMNIE MEKAICQNAP FYTLGPLTTD TAPGYDHITS
AIGGVEIARY GTAMLCYVTP KEHLGLPNKD DVKQGVIAYK IACHAADLAK HHPHAMDRDN
AISKARFEFR WLDQFNLSYD PDTAIAFHDE TLPAEPAKMA HFCSMCGPKF CSMAISQNIR
KRFGGAAQQE QLVEEARSQA IADGMKEMSK KFQESGSSLY QSVKA
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