| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0875 |
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| Symbol | |
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| ID | 8709352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 993779 |
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| End bp | 994726 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482975 |
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| Product | phage capsid family protein |
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| Protein accession | YP_003374092 |
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| Protein GI | 283783338 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAACA GAGATATTGA AAAAGAAATG AAACTAGCAA GTCAGGACTA CCACAACACG
TTTTGGAACG TACTGCGCGA CGCAAATGGT AATGCGAACA ATATTGCAGG AAAACTGCGC
CACATTCATA CAGGTGCCTA TGATTTGCCG ACTTCTTCTC TAGCAAAACT CGAAGCAAAA
CTTGCAAACA AAAGTAATCT TAGAAAACTG TGTACAGTGG TAAAAGCACA CTCGCAATCA
AGCAAATTGT TCATCTATGA AGGTACACCG TTCACTAAAT GGATGAAAGA TTATGATGCG
AATATCATTA CGCATATGCC TATTAAAGAT GGCTTTAAGC GTATTGATGT AACGGATTAT
ACCCTAGTTA ACCTTATTCG TTTGGGTACG GATTTTACAG CTGATCTTGA CTTTGATATC
GAAGAGTTCA TCACAAGCGA ACTGACAAAG CAATTTACAT TGAGTGAGTC GGAAGCTTTT
ATAAATGGCG ATGGGATAAC TAAGCCGACA GGAATTTTAT CAGATACATC AGGTGCTGAG
GTTGCTGTGC AAGCAAAAGA GATTTCCGCA GATACCATCA AACATTTATT CTTCTCGCTA
GATAGTAAGT ATCGAGAAAA TGCCACGTGG CTTATGAATG ATGAAACTGC TCTTTATCTT
CAAACCTTAA AGGACACTAC CGGAGCATAC ATCCTACCTG ATTTTGATGG CAACTTAATG
GGCAGACCTG TGGTCATTGA CAATGCCATG CCTTCTTCGC AAAAGGGAGC AAAAGTTATC
GCCTTTGGTG ATTTTTCCAA CTATTGGATT ATCGAACGCC ATAACCCAAC CATCAAGGTT
CTAAACGAAA TATTTTCTCT TATAGACCAG ATAGGTTACC TCTCTTTTGA GTATTTGGAT
GGGAAACTGG TACATCCTGA AGCAATTAAA GTATTGCAAC TTTCTTAA
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| Protein sequence | MINRDIEKEM KLASQDYHNT FWNVLRDANG NANNIAGKLR HIHTGAYDLP TSSLAKLEAK
LANKSNLRKL CTVVKAHSQS SKLFIYEGTP FTKWMKDYDA NIITHMPIKD GFKRIDVTDY
TLVNLIRLGT DFTADLDFDI EEFITSELTK QFTLSESEAF INGDGITKPT GILSDTSGAE
VAVQAKEISA DTIKHLFFSL DSKYRENATW LMNDETALYL QTLKDTTGAY ILPDFDGNLM
GRPVVIDNAM PSSQKGAKVI AFGDFSNYWI IERHNPTIKV LNEIFSLIDQ IGYLSFEYLD
GKLVHPEAIK VLQLS
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