| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0871 |
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| Symbol | |
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| ID | 8709435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 984221 |
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| End bp | 986119 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482971 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374088 |
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| Protein GI | 283783334 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAGG CGGTCGCAGA TGGACTAACT GTTTCTATTA AGTATCATCC TCGTATTGCC
AAGGTGTTAC TTGATAAGAC CAAAGCTAAA GAAATTGAAA ATTACTATAA AAAGTGTGCC
GATGATGGTG CAACGTATGA TGATATTGAA GCCAGTAAAC GTGCAATGAG TTCTATGGAA
GTTATCCTTG GCGAGCCTTC TCGCTTGGAG AGGCTTGCTA TAGATATTCA TGACCATTAT
ATTTCATCTT GTGATAGTGA CCCAGATAGA ATTCAGAAAG CAATGATTGT CTGCTCTAGC
AGAAAAATTG CATATTCACT TCTTTTGAAA TTCAAGGATA AATATCCGGA ATGGTTTGAA
GAAAAGAAAA CTCCTGACGG AGTTACTGCA ACAGATGAAG AACTTAAAGA ATTAAAGCCT
ATGCCATTTA TGGCTATGGT ATCGAGTGTT GGAAGTAATG ATGAAGCTGA GATGTATAAC
TATCTTGGTG GAGTTAAAAA TGATAAACGT TGCGAAGAAC TGGATGCAGC CTTTAAACAG
GAAAAGTCTA ATTTCCATAT TGTTATCGTA GTTGATATGT GGATTACGGG ATTTGATGTT
CCGTCACTTA CATATTTATA TAACGATAAG CCTTTGAAGA AGCACTTGCT GATTCAAACT
ATCAGTCGTG TAAACAGAAA ATATCCCGGC AAAGAATATG GTATGGTTAT CGACTATATT
GGCATTCGCG ATAATATGCG TGAGGCCATG AAGGTTTACG GTGGTGATAC ATCAGTTGCT
CCCACATCGG ATGACGTTGA GCAGGCTACC TCTGCATTCA GGGAGGAGAT TGAAATACTT
AAAGCACTGT TTACAGATTA TGACTTAGCT CCATTCCTTA ATACGAAATG TGACCCTGTT
GAAAGATATA AATTACTTTC CAAAGCGGCT GAGTATGTCT TTACATCAGC ACAGGTCTTG
CAGACAGAAG GAAACGGAAA AACTAATCAG GTCTCATTTA AGACATATTT CTTAAAGTCT
GTTAAGAGAA TGAGAAGTGC TTTTGATATT TGCCAACCTT CTGGAAATCT GGGCGAAGAA
GAATCTGCGC TTGCACAGTG CTTTATGGCT ATAGCAGGCT TCGTTCGTAA AATGAGTGGA
ACCAGCGATG TTGATGCTGA AACTATGAAT CTTGTGGTAT CAAAGATGGT TGAAGAGGCA
TTAAAATACA ATAAGGTAGA AAGTGTTCTT GAAAGTGGCG AGGAAGAAGA TATCTTCTCT
CCTGAATACT TTGAAAAATT ATCAGATGTA GAAATGCCTG CTACAAAGTT AGAATTACTT
ATCAAAATGC TCCGTAAGCA AATAAAGGAA TATGGCAGGG TTAACCAATT AGCAGCGAAA
TCTTTCCAAG AAATGATTGA AAAGACTATT GATGAGTACC ATGAAAGACG TAAGCACCTT
ACTGCTGAAG AAGCCGGGGC AACACAGGAA GCTGCCTCAG AAGATATTAT TAAGGCTGCA
ACTGAACAAG CTTTAGTGAT ACTTCGTCAG ATGAACGAAA ATCGTGAGAG TTTCCGTAAA
ATAGGATTAA CCTTTGAAGA AAAGGCATTC TATGATATTT TGATTGCTCT TCGTGACCAG
TATAAGTTTG AATATGGCAT TGACAAAGAA GTTAACGGTG TTGTGATAAA CGATAAATGC
AAGACACTTG CTAAAAAAGT TAAGGAAATA ATAGATACCG AGTCTTCATT TGTGGACTGG
CTCAACAATC AGAATGTGCG TAATCAGTTA AAATTGAAGA TAAAGATTTG TTTGGTTAAG
AACGGCTATC CGCCACAGTA TAGTCCTGAA GTGTTCACAA AGGTGATGGA GCAGGTAGAA
AATTTTGAGG AGCATTCTGA AACAACTTCA GAAAGTTAG
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| Protein sequence | MDQAVADGLT VSIKYHPRIA KVLLDKTKAK EIENYYKKCA DDGATYDDIE ASKRAMSSME
VILGEPSRLE RLAIDIHDHY ISSCDSDPDR IQKAMIVCSS RKIAYSLLLK FKDKYPEWFE
EKKTPDGVTA TDEELKELKP MPFMAMVSSV GSNDEAEMYN YLGGVKNDKR CEELDAAFKQ
EKSNFHIVIV VDMWITGFDV PSLTYLYNDK PLKKHLLIQT ISRVNRKYPG KEYGMVIDYI
GIRDNMREAM KVYGGDTSVA PTSDDVEQAT SAFREEIEIL KALFTDYDLA PFLNTKCDPV
ERYKLLSKAA EYVFTSAQVL QTEGNGKTNQ VSFKTYFLKS VKRMRSAFDI CQPSGNLGEE
ESALAQCFMA IAGFVRKMSG TSDVDAETMN LVVSKMVEEA LKYNKVESVL ESGEEEDIFS
PEYFEKLSDV EMPATKLELL IKMLRKQIKE YGRVNQLAAK SFQEMIEKTI DEYHERRKHL
TAEEAGATQE AASEDIIKAA TEQALVILRQ MNENRESFRK IGLTFEEKAF YDILIALRDQ
YKFEYGIDKE VNGVVINDKC KTLAKKVKEI IDTESSFVDW LNNQNVRNQL KLKIKICLVK
NGYPPQYSPE VFTKVMEQVE NFEEHSETTS ES
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