Gene HMPREF0424_0860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0860 
Symbol 
ID8709848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp971776 
End bp973824 
Gene Length2049 bp 
Protein Length682 aa 
Translation table11 
GC content44% 
IMG OID646482960 
ProductAMP-binding enzyme 
Protein accessionYP_003374077 
Protein GI283783323 
COG category[I] Lipid transport and metabolism 
COG ID[COG1022] Long-chain acyl-CoA synthetases (AMP-forming) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCGTTT TTAATGCACT CCAACAGCAA GCGTTTAATC TTGCCCGTAA AGCATTGCGT 
ATTGGCAGTA ACTTCGCGCA CCCAGTCAGC GATGACCGTG CAGGCGAACC AGACTACCTT
AATACGGATC AAGAAAACAC AAATACTTTA CTTTCACAAA AGCAACGCCT TCCACACGTA
GAAGAGTGGG GCGCGCAAAT GCCAACAACG ACGTTTATCG ATCCGGAAAC AGGCTTGCTG
ACCACAAAAA CCGAAAGCGC AGCACCTCTT GACGAAGGCA CAAGCATTTA TGACTTATAT
GCAGATCGCG CAGCACGTAT GGGTGACGAT CCGCTTTACA CTTATAAAGA AAACGATAAG
TGGGTCACAA AAACAGCTAA TCAGTTCCTT CAAGAAGTAC GCGATGCTGC AAAAGGTTTG
ATGCACTACG GATTGCGCAA AGGCGACGCC GTTGCCCTTA TGTGCAAAAC ATCATATGAG
TGGGACGTCA CCGACGCAGC AGTTATGGCT TGTGGTGGTG TTCTTGCAAC TATTTATGAC
ACGGATTCAG CTGAGCAAAT TCGCAATATT GTGAATAATT CCGACTCGCG TTTCCTTATT
GTTGAAACAA CTGACATGCG AGATAAAGCT GATGGAGCTA TTGAAGAATG CCCAAGCTTG
GAACGCATTA TTTGCATTGA AACAGGCGGT TTAGCAGAAC TTCAAGCTTT CGGATACGCT
GTTAGCGATG AGGAACTAGA TGCTCGCATT GATTCTGTAA AGAAAACAGA CTTGTGCTCT
ATTGTTTACA CTTCTGGTTC CACAGCTGCA CCTAAAGGCG TGGAAATGAC TCACGAACAC
TATTGCACTA CAGCGTTGAA TTTGCCTGTT TACTTGCCAA ATTTGCTTAG CGAAAAAGAC
GGTTCTGTGC TTTTGTTCCT TCCTCAAGCA CACTCTTTTG CAAGAGCAAT TAACTATATT
GTTGTTGCAA GTACGTTGCG CATTTATATT GCTCAAGGTA TTCCTACTTT GATTTCTGAT
TTGCAAGTTG CAAAACCTAC GGTTATGATC GTTGTCCCTC GAGTTCTTGA GAAGGTTTAT
AACGCAGCTT CGCAGAAGGC TGGTCACGGT GCTAAAGGCT TGGCTTTCCA GGGTGCTGTT
GTGACGGCTC AACAGTATAT GAAGGAAGTT CAGGAATTTG GTGATGCTAA AGCTCTTACT
AAAGCTCGCC GCACTGCTTA CGATCCGCTT GTTTATCGTC CACTTCGTCA AGCTCTTGGC
GGTCGCGCAC GCTGGATTGT TGCAGGTGGA GCTCCTCTAG ATCCTGAATT GCTTTCATTC
TTCCGCGGAG CAGGAGTTCC TGTCTACGAA GGTTATGGTC TTACAGAAAC TACTGCACCA
TGCGCGTTTA CTCCTATTGG AGTTCCATTC CGAGAAGGTT CTGTTGGCAT CGCATTCCCA
GCTTTTACTT TGCGAATCGC ATCCGACGGC GAAGTTCAAA TTAAAGGCAC TTGCGTATTC
CATAAGTATC ACAAAAACGA TGAAGCAACA GAAACTTCAT TTACTAAAGA CGGATGGTAT
GCAACAGGCG ATTTGGGACG AATTGACGAC GATGGCATGC TTTATATTAC CGGACGTAAG
AAGGATTTGA TTATTACTGC TGGCGGTAAG AATGTTGCTC CTGGACCTAT TGAAGAGATG
ATTAAGAGAT GCGAACTTGT GTCTCAAGCT CTCGTTCTTG GAGATAAGCG TCCGTTTATT
TCTGCACTTG TTACTTTAGA CGAAGAAACT TTACGAAATT GGCTTAAACT CAAGGGTCTT
GACGCCACTA TGAGCATGGA AGAGGCTGCT AATAATGCTG TTGTTCGTGC TGAAGTGCAA
AAATTTATAG ATCTTGCCAA TGAAGGCGTG TCACGCGCAG AATCTGTGCG AAAGTTCATT
ATTTTGCCAG AAGAGTTTAC GCAAGAAAAC GGCTTAATGA CTGCGTCTAT GAAGATTATT
CGTCCACGAG TTATTAAGCG TTACACTACT TTACTTAATA CACAAATGTA TACGACGCGC
AAAAAGTAG
 
Protein sequence
MSVFNALQQQ AFNLARKALR IGSNFAHPVS DDRAGEPDYL NTDQENTNTL LSQKQRLPHV 
EEWGAQMPTT TFIDPETGLL TTKTESAAPL DEGTSIYDLY ADRAARMGDD PLYTYKENDK
WVTKTANQFL QEVRDAAKGL MHYGLRKGDA VALMCKTSYE WDVTDAAVMA CGGVLATIYD
TDSAEQIRNI VNNSDSRFLI VETTDMRDKA DGAIEECPSL ERIICIETGG LAELQAFGYA
VSDEELDARI DSVKKTDLCS IVYTSGSTAA PKGVEMTHEH YCTTALNLPV YLPNLLSEKD
GSVLLFLPQA HSFARAINYI VVASTLRIYI AQGIPTLISD LQVAKPTVMI VVPRVLEKVY
NAASQKAGHG AKGLAFQGAV VTAQQYMKEV QEFGDAKALT KARRTAYDPL VYRPLRQALG
GRARWIVAGG APLDPELLSF FRGAGVPVYE GYGLTETTAP CAFTPIGVPF REGSVGIAFP
AFTLRIASDG EVQIKGTCVF HKYHKNDEAT ETSFTKDGWY ATGDLGRIDD DGMLYITGRK
KDLIITAGGK NVAPGPIEEM IKRCELVSQA LVLGDKRPFI SALVTLDEET LRNWLKLKGL
DATMSMEEAA NNAVVRAEVQ KFIDLANEGV SRAESVRKFI ILPEEFTQEN GLMTASMKII
RPRVIKRYTT LLNTQMYTTR KK