| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0839 |
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| Symbol | |
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| ID | 8709882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 950366 |
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| End bp | 951124 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482939 |
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| Product | DNA-binding regulatory protein, YebC/PmpR family |
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| Protein accession | YP_003374056 |
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| Protein GI | 283783302 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0217] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGGTC ATTCCAAGTG GGCGACTACA AAGCACAAGA AGGCCGCTAT CGACGCAAAG
CGTGGCAAGC TTTTTGCCAA GCTTATTAAG AACATTGAAA TTGCTGCACG TTTGGGTGGT
GGCGATCCTG ATGGTAACCC TACGCTGTAC GATGCCATCG TTAAAGCTAA GAAGGCTTCC
ATGCCTGCTG ACAATATCAA GCGCGCTGTA AAGCGTGGTT CTGGTGAAGA AGCTGGCGGC
GCAAACTATG AAGAGATTGT TTACGAAGGT TACGCTCCTG CAGGTGTTGG ATTGATTATT
GAATGCCTTA CTGATAACCG TAATCGTGCT GCTGCTGATG TGCGTTCAAC TCTTACTAAG
GGCAACGGTT CTTTGGCAAC AAGCGGTTCC GTGAGCTTCA ACTTCGAACG TAAAGGTTTG
ATTGAAGTTC CATCCGAAGG TGTTGACTAC GATAAGCTTT TCGAAGTTGC AGCTGAAGCT
GGAGCTGAAG ATGTTGCTGA TGATGGCGAT GTTTATTCTG TTTACACCAA TTCCAGTGAT
TTGGTAACTG TGCGTAAGGC TTTGCAGGAA GCTGGTTTCG ACTATGATTC TGCAGATATT
ATTATGCATC CAAATAATGA GGTTGAATTG AGCTTCGAAG ATGCTCAAAA GGTTTCTCGC
TTAATCGATA ATCTCGATGA CTTGGACGAT GTTCAGAATA TTTACAGCAA CTGGACCGCT
TCAGATGAAG TTATGGCTCA GCTTGAGGAA GCTGAATAG
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| Protein sequence | MSGHSKWATT KHKKAAIDAK RGKLFAKLIK NIEIAARLGG GDPDGNPTLY DAIVKAKKAS
MPADNIKRAV KRGSGEEAGG ANYEEIVYEG YAPAGVGLII ECLTDNRNRA AADVRSTLTK
GNGSLATSGS VSFNFERKGL IEVPSEGVDY DKLFEVAAEA GAEDVADDGD VYSVYTNSSD
LVTVRKALQE AGFDYDSADI IMHPNNEVEL SFEDAQKVSR LIDNLDDLDD VQNIYSNWTA
SDEVMAQLEE AE
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