Gene HMPREF0424_0816 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0816 
SymboluvrA 
ID8709609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp921012 
End bp923963 
Gene Length2952 bp 
Protein Length983 aa 
Translation table11 
GC content40% 
IMG OID646482917 
Productexcinuclease ABC, A subunit 
Protein accessionYP_003374034 
Protein GI283783280 
COG category[L] Replication, recombination and repair 
COG ID[COG0178] Excinuclease ATPase subunit 
TIGRFAM ID[TIGR00630] excinuclease ABC, A subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAAAAC AGGCGAATGA ACAAAATGAC TCGTTGCAAG AATTGCTTGA TAATGCTCCT 
ATGAGCGCTA ACAACGGTAC TTTTATAGCT GATTTATCTA GTATTCCTTC TGAATGGAAA
ATAACTATCC AGGGTGCTAG AGAGCATAAT CTAAAAAATG TAAGTTTATC GATTCCTAGG
AATCGTATGG TTGTTTTTAC TGGTCTTTCT GGATCTGGTA AGTCCTCGCT TGCGTTTGAT
ACGCTTTTTG CAGAAGGTCA GCGACGCTAT GTTGAGTCGC TTAGTGCTTA TGCTCGCCAA
TTTTTAGGAC GTATGGATAA GCCTGATGTT GATTTTATTG AGGGCCTAAG TCCTGCTGTT
TCTATTGATC AAAAAACTAC GAATCGTAAT CCTCGTTCTA CTGTTGGAAC TATTACAGAA
ATATATGATT ATTTGCGATT ATTGTTTGCT AGGATTGGTG TGCCTCACTG TCCTGAATGT
GGTCAAATAG TAAGCTCTCA AACTCCTCAG CAAATGACTG ATTCGTTGCT TGCTATGCCA
GAACGTACGA GGTTACAAAT TCTTGCTCCA GTAGTTCGTG GTCGTAAAGG AGAATTTAAA
GACACGCTTG AGCTTTTGCG CTCAGATGGT TATGCTCGTG CGATTATTGA CGGACAAATG
CATGAGCTTT CTGAAGATAT TACTCTTACT AAACAGAAGA AACATACAAT TGAAGTAGTA
GTAGATCGTT TAGTTATTAA AGATGGCATT CGTGTTCGAT TAACTGATTC GATTGAAACA
GCATTAAAAC TATCTAAGGG AGTAGTAATT GCTGATTTTG TTGACGAACC AGAAGACTCA
CAAACGCGTC GTAAATCATT TTCGGAGCAT CGCGCATGCC CAAATAATCA TCAATTAGAG
CTTGATGAGA TTGAGCCTAG AACATTTTCA TTCAATGCTC CTTATGGTGC TTGCTCTGAA
TGTTCTGGCA TTGGATACAA TCTCGAAATT GATCCTGAAC TTGTTATCCC AGACCCAGAC
AAATCTCTTG CGCAGGGAGC TATTGAGCCG TGGGCAATGA ATAAGTCAGC TGGAATGTAT
TATCAGCACA TACTTTCAGG ACTTGCTAAA GATTTGCATT TTGATATGAA TACTCCGTGG
AAGGATCTAG CGGAAGACGT TAAACATGAC ATCATGTATG GTCATGATTT CACAGTTCAA
GTTTCCTACA CAAATAGGTG GGGGCGTCAG CGTGAATATT CTACTGGCTT TGAAGGTGTA
GTTCGTACGC TTATGCGCAA ACATGACGAA ACTGATTCTG ATCAAATGCG TCAATATTAT
GAGTCGTATA TGCGTGAAGT TCCATGCCAA AAATGTAATG GAAAGCGTTT ACGTCCAGAA
GTTCTTGCAG TTACAGTATC TAATACTTCC ATAGCTGAAG TTTGCGATAT GCCAGTAGAG
CGAAGTCTAG CATGGGTAAA TGCTTTGCAT TTGGATGGTT CTCAAGCAGT AATTGCAACA
GAAATATTAA AAGAGATTCG TGCTCGACTT GGTTTTTTGA ACGATGTGGG TTTAAGCTAT
CTCACTCTTT CAAGAGCTGC AAAAACTTTG TCTGGTGGAG AGGCTCAACG TATTCGTTTA
GCTACTCAAA TTGGATCAGG TTTAGTTGGT GTTATGTACG TGCTTGATGA GCCGTCTATT
GGATTGCATC AAAGAGATAA TGAGCGTTTG ATTGCAACAT TGCATCATCT GCGAAATCTT
GGTAATACGC TTATTGTTGT CGAGCATGAT GAAGATACTA TTCGTCAGTC CGATTGGCTT
GTTGATATTG GTCCAGAAGC TGGCGAGCAT GGAGGAGAAG TAGTATATTC AGGTCCGTCT
GATGGAATTA TTAAAGCTCA GCGTTCAATT ACTGGAGATT ATATTGCTCA CAGACGCTCA
ATAGATGTGC CAAAACAACG TCGTAGTGTA GACGAAAATC GTATGCTCCA TATAATTAAT
GCCCATGAGC ATAATTTAAA AAATATTGAT GTAAGCATAC CTTTGGGAGT ATTCACATGC
ATAACGGGTG TATCTGGATC TGGTAAATCA ACACTTATAA ACTCAATTTT ATATCCTGTT
CTTGCAGACA AACTAAATGG TGCTCGAATT GTTCCAGGAA AGCACAAACG TATTGATGGT
ATTGAGCTTT GTGACAAAGT AGTGCATGTC GATCAGAATC CTATAGGAAG AACTCCTCGT
TCTAATCCAG CAACTTACAC TGGTGTTTGG GATAAAATAC GTTCATTGTT TGCTCAGACT
CCAGAAGCAA AAGTTCGTGG CTATGGTCCT GGTCGCTTCT CGTTTAATGT TAAAGGAGGC
AGATGTGAAG CATGCCATGG CGACGGTACT TTAAAAATAG AAATGAACTT TTTGCCTGAC
GTATACGTAG AGTGTGAAGT TTGTCATGGT AAACGTTATA ACCGTGAAAC TTTGGAAGTT
ACATATAACG GAAAGTCTGT TGCAGATGTT CTTAATATGC CTATTTGTGA AGCTGCAATA
TTTTTCAAAG CATATCCTTC TATTTCTCGA TATTTAGATA CTTTAGTAAA AGTTGGCTTG
GGCTATATTC GTCTTGGTCA AAGCGCAACA ACGCTTTCTG GCGGTGAGTC TCAACGAGTA
AAGCTTGCTA CAGAGCTGCA GAGAAGATCT ACTGGTAAAA CAGTTTATAT TCTTGATGAA
CCTACTACTG GACTGCATTT TGAAGATGTT AGGAAACTTC TAGCGGTTTT GCAATCTCTT
GTAGATAAAG GCAACAGTGT TATTGTAATT GAACATAATC TTGATGTTGT GAAATCTGCA
GATTGGATTA TTGATTTAGG TCCAGAAGGA GGAGATAAAG GCGGAACCTT AGTTGCAGAA
GGTAGTCCTG AGAGCGTAGC GCGTAATGGC GAGAGTTGGA CAGGTAAATT CCTTAAGCAA
ATGTTACATT AA
 
Protein sequence
MSKQANEQND SLQELLDNAP MSANNGTFIA DLSSIPSEWK ITIQGAREHN LKNVSLSIPR 
NRMVVFTGLS GSGKSSLAFD TLFAEGQRRY VESLSAYARQ FLGRMDKPDV DFIEGLSPAV
SIDQKTTNRN PRSTVGTITE IYDYLRLLFA RIGVPHCPEC GQIVSSQTPQ QMTDSLLAMP
ERTRLQILAP VVRGRKGEFK DTLELLRSDG YARAIIDGQM HELSEDITLT KQKKHTIEVV
VDRLVIKDGI RVRLTDSIET ALKLSKGVVI ADFVDEPEDS QTRRKSFSEH RACPNNHQLE
LDEIEPRTFS FNAPYGACSE CSGIGYNLEI DPELVIPDPD KSLAQGAIEP WAMNKSAGMY
YQHILSGLAK DLHFDMNTPW KDLAEDVKHD IMYGHDFTVQ VSYTNRWGRQ REYSTGFEGV
VRTLMRKHDE TDSDQMRQYY ESYMREVPCQ KCNGKRLRPE VLAVTVSNTS IAEVCDMPVE
RSLAWVNALH LDGSQAVIAT EILKEIRARL GFLNDVGLSY LTLSRAAKTL SGGEAQRIRL
ATQIGSGLVG VMYVLDEPSI GLHQRDNERL IATLHHLRNL GNTLIVVEHD EDTIRQSDWL
VDIGPEAGEH GGEVVYSGPS DGIIKAQRSI TGDYIAHRRS IDVPKQRRSV DENRMLHIIN
AHEHNLKNID VSIPLGVFTC ITGVSGSGKS TLINSILYPV LADKLNGARI VPGKHKRIDG
IELCDKVVHV DQNPIGRTPR SNPATYTGVW DKIRSLFAQT PEAKVRGYGP GRFSFNVKGG
RCEACHGDGT LKIEMNFLPD VYVECEVCHG KRYNRETLEV TYNGKSVADV LNMPICEAAI
FFKAYPSISR YLDTLVKVGL GYIRLGQSAT TLSGGESQRV KLATELQRRS TGKTVYILDE
PTTGLHFEDV RKLLAVLQSL VDKGNSVIVI EHNLDVVKSA DWIIDLGPEG GDKGGTLVAE
GSPESVARNG ESWTGKFLKQ MLH