Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0816 |
Symbol | uvrA |
ID | 8709609 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 921012 |
End bp | 923963 |
Gene Length | 2952 bp |
Protein Length | 983 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482917 |
Product | excinuclease ABC, A subunit |
Protein accession | YP_003374034 |
Protein GI | 283783280 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0178] Excinuclease ATPase subunit |
TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCAAAAC AGGCGAATGA ACAAAATGAC TCGTTGCAAG AATTGCTTGA TAATGCTCCT ATGAGCGCTA ACAACGGTAC TTTTATAGCT GATTTATCTA GTATTCCTTC TGAATGGAAA ATAACTATCC AGGGTGCTAG AGAGCATAAT CTAAAAAATG TAAGTTTATC GATTCCTAGG AATCGTATGG TTGTTTTTAC TGGTCTTTCT GGATCTGGTA AGTCCTCGCT TGCGTTTGAT ACGCTTTTTG CAGAAGGTCA GCGACGCTAT GTTGAGTCGC TTAGTGCTTA TGCTCGCCAA TTTTTAGGAC GTATGGATAA GCCTGATGTT GATTTTATTG AGGGCCTAAG TCCTGCTGTT TCTATTGATC AAAAAACTAC GAATCGTAAT CCTCGTTCTA CTGTTGGAAC TATTACAGAA ATATATGATT ATTTGCGATT ATTGTTTGCT AGGATTGGTG TGCCTCACTG TCCTGAATGT GGTCAAATAG TAAGCTCTCA AACTCCTCAG CAAATGACTG ATTCGTTGCT TGCTATGCCA GAACGTACGA GGTTACAAAT TCTTGCTCCA GTAGTTCGTG GTCGTAAAGG AGAATTTAAA GACACGCTTG AGCTTTTGCG CTCAGATGGT TATGCTCGTG CGATTATTGA CGGACAAATG CATGAGCTTT CTGAAGATAT TACTCTTACT AAACAGAAGA AACATACAAT TGAAGTAGTA GTAGATCGTT TAGTTATTAA AGATGGCATT CGTGTTCGAT TAACTGATTC GATTGAAACA GCATTAAAAC TATCTAAGGG AGTAGTAATT GCTGATTTTG TTGACGAACC AGAAGACTCA CAAACGCGTC GTAAATCATT TTCGGAGCAT CGCGCATGCC CAAATAATCA TCAATTAGAG CTTGATGAGA TTGAGCCTAG AACATTTTCA TTCAATGCTC CTTATGGTGC TTGCTCTGAA TGTTCTGGCA TTGGATACAA TCTCGAAATT GATCCTGAAC TTGTTATCCC AGACCCAGAC AAATCTCTTG CGCAGGGAGC TATTGAGCCG TGGGCAATGA ATAAGTCAGC TGGAATGTAT TATCAGCACA TACTTTCAGG ACTTGCTAAA GATTTGCATT TTGATATGAA TACTCCGTGG AAGGATCTAG CGGAAGACGT TAAACATGAC ATCATGTATG GTCATGATTT CACAGTTCAA GTTTCCTACA CAAATAGGTG GGGGCGTCAG CGTGAATATT CTACTGGCTT TGAAGGTGTA GTTCGTACGC TTATGCGCAA ACATGACGAA ACTGATTCTG ATCAAATGCG TCAATATTAT GAGTCGTATA TGCGTGAAGT TCCATGCCAA AAATGTAATG GAAAGCGTTT ACGTCCAGAA GTTCTTGCAG TTACAGTATC TAATACTTCC ATAGCTGAAG TTTGCGATAT GCCAGTAGAG CGAAGTCTAG CATGGGTAAA TGCTTTGCAT TTGGATGGTT CTCAAGCAGT AATTGCAACA GAAATATTAA AAGAGATTCG TGCTCGACTT GGTTTTTTGA ACGATGTGGG TTTAAGCTAT CTCACTCTTT CAAGAGCTGC AAAAACTTTG TCTGGTGGAG AGGCTCAACG TATTCGTTTA GCTACTCAAA TTGGATCAGG TTTAGTTGGT GTTATGTACG TGCTTGATGA GCCGTCTATT GGATTGCATC AAAGAGATAA TGAGCGTTTG ATTGCAACAT TGCATCATCT GCGAAATCTT GGTAATACGC TTATTGTTGT CGAGCATGAT GAAGATACTA TTCGTCAGTC CGATTGGCTT GTTGATATTG GTCCAGAAGC TGGCGAGCAT GGAGGAGAAG TAGTATATTC AGGTCCGTCT GATGGAATTA TTAAAGCTCA GCGTTCAATT ACTGGAGATT ATATTGCTCA CAGACGCTCA ATAGATGTGC CAAAACAACG TCGTAGTGTA GACGAAAATC GTATGCTCCA TATAATTAAT GCCCATGAGC ATAATTTAAA AAATATTGAT GTAAGCATAC CTTTGGGAGT ATTCACATGC ATAACGGGTG TATCTGGATC TGGTAAATCA ACACTTATAA ACTCAATTTT ATATCCTGTT CTTGCAGACA AACTAAATGG TGCTCGAATT GTTCCAGGAA AGCACAAACG TATTGATGGT ATTGAGCTTT GTGACAAAGT AGTGCATGTC GATCAGAATC CTATAGGAAG AACTCCTCGT TCTAATCCAG CAACTTACAC TGGTGTTTGG GATAAAATAC GTTCATTGTT TGCTCAGACT CCAGAAGCAA AAGTTCGTGG CTATGGTCCT GGTCGCTTCT CGTTTAATGT TAAAGGAGGC AGATGTGAAG CATGCCATGG CGACGGTACT TTAAAAATAG AAATGAACTT TTTGCCTGAC GTATACGTAG AGTGTGAAGT TTGTCATGGT AAACGTTATA ACCGTGAAAC TTTGGAAGTT ACATATAACG GAAAGTCTGT TGCAGATGTT CTTAATATGC CTATTTGTGA AGCTGCAATA TTTTTCAAAG CATATCCTTC TATTTCTCGA TATTTAGATA CTTTAGTAAA AGTTGGCTTG GGCTATATTC GTCTTGGTCA AAGCGCAACA ACGCTTTCTG GCGGTGAGTC TCAACGAGTA AAGCTTGCTA CAGAGCTGCA GAGAAGATCT ACTGGTAAAA CAGTTTATAT TCTTGATGAA CCTACTACTG GACTGCATTT TGAAGATGTT AGGAAACTTC TAGCGGTTTT GCAATCTCTT GTAGATAAAG GCAACAGTGT TATTGTAATT GAACATAATC TTGATGTTGT GAAATCTGCA GATTGGATTA TTGATTTAGG TCCAGAAGGA GGAGATAAAG GCGGAACCTT AGTTGCAGAA GGTAGTCCTG AGAGCGTAGC GCGTAATGGC GAGAGTTGGA CAGGTAAATT CCTTAAGCAA ATGTTACATT AA
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Protein sequence | MSKQANEQND SLQELLDNAP MSANNGTFIA DLSSIPSEWK ITIQGAREHN LKNVSLSIPR NRMVVFTGLS GSGKSSLAFD TLFAEGQRRY VESLSAYARQ FLGRMDKPDV DFIEGLSPAV SIDQKTTNRN PRSTVGTITE IYDYLRLLFA RIGVPHCPEC GQIVSSQTPQ QMTDSLLAMP ERTRLQILAP VVRGRKGEFK DTLELLRSDG YARAIIDGQM HELSEDITLT KQKKHTIEVV VDRLVIKDGI RVRLTDSIET ALKLSKGVVI ADFVDEPEDS QTRRKSFSEH RACPNNHQLE LDEIEPRTFS FNAPYGACSE CSGIGYNLEI DPELVIPDPD KSLAQGAIEP WAMNKSAGMY YQHILSGLAK DLHFDMNTPW KDLAEDVKHD IMYGHDFTVQ VSYTNRWGRQ REYSTGFEGV VRTLMRKHDE TDSDQMRQYY ESYMREVPCQ KCNGKRLRPE VLAVTVSNTS IAEVCDMPVE RSLAWVNALH LDGSQAVIAT EILKEIRARL GFLNDVGLSY LTLSRAAKTL SGGEAQRIRL ATQIGSGLVG VMYVLDEPSI GLHQRDNERL IATLHHLRNL GNTLIVVEHD EDTIRQSDWL VDIGPEAGEH GGEVVYSGPS DGIIKAQRSI TGDYIAHRRS IDVPKQRRSV DENRMLHIIN AHEHNLKNID VSIPLGVFTC ITGVSGSGKS TLINSILYPV LADKLNGARI VPGKHKRIDG IELCDKVVHV DQNPIGRTPR SNPATYTGVW DKIRSLFAQT PEAKVRGYGP GRFSFNVKGG RCEACHGDGT LKIEMNFLPD VYVECEVCHG KRYNRETLEV TYNGKSVADV LNMPICEAAI FFKAYPSISR YLDTLVKVGL GYIRLGQSAT TLSGGESQRV KLATELQRRS TGKTVYILDE PTTGLHFEDV RKLLAVLQSL VDKGNSVIVI EHNLDVVKSA DWIIDLGPEG GDKGGTLVAE GSPESVARNG ESWTGKFLKQ MLH
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