Gene HMPREF0424_0802 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0802 
Symbol 
ID8708998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp906452 
End bp907057 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content37% 
IMG OID646482903 
Productputative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 
Protein accessionYP_003374020 
Protein GI283783266 
COG category[I] Lipid transport and metabolism 
COG ID[COG0558] Phosphatidylglycerophosphate synthase 
TIGRFAM ID[TIGR00560] CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTAAGT TCGTTATTAA TCAGGAATAT AGTCCTGAAG CAATGAATCG AGTTTTGACA 
ATACCTAATC TAATCAGTTT TTTGCGCATA TGTTCAATTC CTTATATTGC TTGGCTTATT 
ACACAGCATC AGATGACTTT TGCTCTTATT GTTTTAGCAA TATCTGCGTT TTCTGATTGT 
CTTGATGGTT ATATTGCTCG TACTTTGAAT CAAGTTAGTA AGTTGGGTCA AATCCTTGAT 
CCTATAGCTG ATCGTCTATT GATTTTTTGC AGTACGTTAG CTTTAGCTGT TGCAATGATT 
ATCCCTTGGT GGGCACTTTT ATTAGTAGTA TTGCGTGATG CTATTATGGC TGTACTTGTA 
ATAGTACTTG CGCAAAGAGA TTATGGTCCT TTGCCTGTTA ACTTCGTAGG TAAAGCTGGC 
ACGGCGCTTC TTATGCTTTC AATCGTTTCT TTAATGATTG TTTATGCTGT AGCTACTGAG 
TCTATGTTTC TGCTTTATGC TGCTGCACTT GCATGTGGAG TGTGGGGTAT TGCTCTATAT 
TGGTATGCTG GCTTGCTTTA CTATATGCAA GCTTATTTGT TACTTGCTAA GTCAAGAAAA 
AACTAA
 
Protein sequence
MTKFVINQEY SPEAMNRVLT IPNLISFLRI CSIPYIAWLI TQHQMTFALI VLAISAFSDC 
LDGYIARTLN QVSKLGQILD PIADRLLIFC STLALAVAMI IPWWALLLVV LRDAIMAVLV 
IVLAQRDYGP LPVNFVGKAG TALLMLSIVS LMIVYAVATE SMFLLYAAAL ACGVWGIALY 
WYAGLLYYMQ AYLLLAKSRK N