Gene HMPREF0424_0795 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0795 
Symbol 
ID8708936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp901788 
End bp902522 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content40% 
IMG OID646482896 
Producthaloacid dehalogenase-like hydrolase 
Protein accessionYP_003374013 
Protein GI283783259 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAT TCTCAGTGTC TTCAGGATGT ACTAGTCGTC ACATTATTCT GCTTGATCTT 
GATGGCACAT TAACAAAGTC AGATGCTGGT ATTATTACTT GCGCAAAGCT TGCATTGAAA
GAGTTGAAAC AGCCTATTCC GGACGATGCT GAAATGCACC GTTTTATAGG TCCTTCAATT
TTAGAATCTC TTCAACGCAA TAATGTGCCT GAATCGCTGC TAGCAAAGGG ACTTGCTACG
TATCGCAAGT ATTATTCTGA AGTAGCAACT TTTGATGATC CTAATAATCC TGGTAAAAAA
ATTCCAGGAT GCCTACTTAA CAAAGTATAC GATGGAATAC TTGAGCAACT TACAAAACTT
CGTGAAGCTG GATATTATTT AGCAACCGCA TCTTGCAAGC CAGAATATCA AGTAAAGCCT
ATTTGCGAAT ATTTTGGTTT GACGAAGTAT CTTGACGGAA TTTATGGCGC GAGTAAAGAT
ATGTCGCGTA TTAGCAAAAC TCAAGTTATT CGTTATGTTT TTGATGTGAT TGATTACAAT
CCAGAAAAAG GCGACAGAGC TTTGATGGTT GGAGACCGCT GGACTGATGC TGACGGAGCA
AAAGATTGCG GCTTGGATTG CTTGGGATGC GCTTGGGGCT ATGCTGAGCC TGGCGAGCTT
GAAGCACACG GATCTTACAG AATTATTGAT AGCGTAAACG AATTAAACAC TGCAATTTGC
GAATATTTCG CTTAA
 
Protein sequence
MSEFSVSSGC TSRHIILLDL DGTLTKSDAG IITCAKLALK ELKQPIPDDA EMHRFIGPSI 
LESLQRNNVP ESLLAKGLAT YRKYYSEVAT FDDPNNPGKK IPGCLLNKVY DGILEQLTKL
REAGYYLATA SCKPEYQVKP ICEYFGLTKY LDGIYGASKD MSRISKTQVI RYVFDVIDYN
PEKGDRALMV GDRWTDADGA KDCGLDCLGC AWGYAEPGEL EAHGSYRIID SVNELNTAIC
EYFA