Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0795 |
Symbol | |
ID | 8708936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 901788 |
End bp | 902522 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482896 |
Product | haloacid dehalogenase-like hydrolase |
Protein accession | YP_003374013 |
Protein GI | 283783259 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAT TCTCAGTGTC TTCAGGATGT ACTAGTCGTC ACATTATTCT GCTTGATCTT GATGGCACAT TAACAAAGTC AGATGCTGGT ATTATTACTT GCGCAAAGCT TGCATTGAAA GAGTTGAAAC AGCCTATTCC GGACGATGCT GAAATGCACC GTTTTATAGG TCCTTCAATT TTAGAATCTC TTCAACGCAA TAATGTGCCT GAATCGCTGC TAGCAAAGGG ACTTGCTACG TATCGCAAGT ATTATTCTGA AGTAGCAACT TTTGATGATC CTAATAATCC TGGTAAAAAA ATTCCAGGAT GCCTACTTAA CAAAGTATAC GATGGAATAC TTGAGCAACT TACAAAACTT CGTGAAGCTG GATATTATTT AGCAACCGCA TCTTGCAAGC CAGAATATCA AGTAAAGCCT ATTTGCGAAT ATTTTGGTTT GACGAAGTAT CTTGACGGAA TTTATGGCGC GAGTAAAGAT ATGTCGCGTA TTAGCAAAAC TCAAGTTATT CGTTATGTTT TTGATGTGAT TGATTACAAT CCAGAAAAAG GCGACAGAGC TTTGATGGTT GGAGACCGCT GGACTGATGC TGACGGAGCA AAAGATTGCG GCTTGGATTG CTTGGGATGC GCTTGGGGCT ATGCTGAGCC TGGCGAGCTT GAAGCACACG GATCTTACAG AATTATTGAT AGCGTAAACG AATTAAACAC TGCAATTTGC GAATATTTCG CTTAA
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Protein sequence | MSEFSVSSGC TSRHIILLDL DGTLTKSDAG IITCAKLALK ELKQPIPDDA EMHRFIGPSI LESLQRNNVP ESLLAKGLAT YRKYYSEVAT FDDPNNPGKK IPGCLLNKVY DGILEQLTKL REAGYYLATA SCKPEYQVKP ICEYFGLTKY LDGIYGASKD MSRISKTQVI RYVFDVIDYN PEKGDRALMV GDRWTDADGA KDCGLDCLGC AWGYAEPGEL EAHGSYRIID SVNELNTAIC EYFA
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