| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0793 |
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| Symbol | |
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| ID | 8709719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 898705 |
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| End bp | 901338 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482894 |
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| Product | DEAD/DEAH box helicase |
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| Protein accession | YP_003374011 |
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| Protein GI | 283783257 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4581] Superfamily II RNA helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.575248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCATT TATCACAGAA AAAAGACTGC AAAAATAAAT CAGGCAATCC AACTGACTGC
AATGAGAATG ATGTAGTATT ATCTCCTTCA CAACGTTTCG CAGCTTTTAA AAATACAATG
AAGCACGAGC ACTCGATGGC ATCTAAATTT GAGCGTTCTT TGTCTTTTGA ACTTGATGAT
TTTCAACTTG AAGCTATTGA TGCACTAGAA AATGACAATA ATGTTTTAGT TGCTGCTCCT
ACTGGAGCTG GTAAAACTGT TGTTGCGGAT TTTGCTGTAT TTCTTGCGCA AAATCGCAAT
GTAAAAGCTT TTTACACAAC GCCTATTAAA GCTTTAAGTA ATCAAAAATA TCACGATTTC
TGCGAACTAT ACGGCTCAGA CAGAGTAGGG TTATTAACTG GAGATACTTC TGTAAATCCT
GAAGCAGACA TTGTTGTAAT GACTACTGAA GTTTTAAGAA ATATGCTTTA CGAGCATTCG
ATTACGTTGC AATCCTTAGG TTTTGTCGTT CTTGATGAAA TTCATTATCT TGCAGATAAA
TTCCGCGGAG CTGTGTGGGA GGAAGTTATT ATTCACCTTC CGAAATCGGT GAAAATTATT
GGGTTGTCTG CAACTGTTTC AAATGTTGAA GATTTTTCTG CATGGCTAGA ATCAGTGCGT
GGAGAAACTC ATTTGATTGT CGACGAACAC AGACCTGTGC CTTTAGAAAG ACATGTTGTT
GTTCAAGAGG ATTCTGCAAC TGAGCCTGAG TTACTCGATT TATACGACCA TGACAATAAT
GGAAACGTAA CTAAGCGCGT TAACCCTGCA TTGACTAGGA AACTTAATGA ATTTGAGTAC
CGAGCTCGTC GCCGTAAAGA ATCTTACAGC GATAGCAAAT ACCGTTACAG AAAAGGTAAG
AAACACAGAG TTAACGGGGG AGTTGCACAG TTAGATAAAT GCGCGAAACG ACATACTCCT
CGCCGCTGGG CTGTTATTGA CGAATTAGAT TACCTAGGAA TGCTGCCAGG AATTTATTTT
ATCTTCTCTC GTTCCGGATG CGATCAAGCT GTTCAACAAT GTTTAAACGC AGGATTAATA
CTTACCTCTG ATGAAGAAAT GTACGAAATA CGTAAAATCG TCGACAGTAT GGTTGCAAAT
CAACTTTCTA AAGAAGATTT ACACGCTTTA AGCTTTGAAC GTTTTCGTTT TGCTCTCGAA
CAAGGATTTG CAGCACATCA TGCCGGTATG ATTGCATTAT TCCGTCACAT TGTTGAAACA
CTATTTGAAC GCGGACTTAT TAAAGTTGTT TTTGCAACAG AAACACTTGC TTTAGGCTTA
AATATGCCAG CTCGAAGCGT TGTTGTAGAA AAGCTAGTAA AATTTGACGG CACTGGGCAT
GTACCTCTTA CGCCTGGAGA ATTTACGCAA CTTACAGGTC GTGCTGGAAG ACGTGGAATT
GACGATATTG GTTACGCAAT TCTTGTAGAT CATGCTGATT TCGTCCCTCA ACAAGCTGCA
GCACTTTCTA GTAAACGCGT ATACCCGCTA CATTCCAGCT TCGTTCCTAC GTTTAATATG
GCAGTTAATT TGCTGAACTC AAGCGATGCA GACACTGCTA GAACAACACT AGATCGTTCT
TTTGCTCAAT GGGAAGCTAA TGCTTCTGCT GAACGTTTAC ATAATCGCAT GAACGAACTT
GAAACAGCTC TTAAAGGCTA TGAAGAAGCA TTCCACTGCG AACATGGAGA TTTTGCTGAA
TTCTTACAAT TACGCATGAA GCTTAAAGAA GCTCAACACG ATCAACGCCG TAAACTTAAA
CATACTTTAT TCCGCACAGA TGCAGAACGC ACAGCAGCGT TTAAAGCGTT GGATGATGTT
ATTGCAAATC TTAGAGAAGC TGAGCGAACG CATCCGTGTG CAGGTTGTGC AGATATTCAA
CAACATTTGC GTTGGGGCTA CCATTGGATT AGAGAACATA AGGAACTTGA TCAAGTACGT
GAACGCTACG AATCTCGTAC TGGTTCTGTT GCTAGAACTT TTGACCATAT TTGTGACGTA
TTGTACAGTT TGGATTATTT ACAATCTGAA GATTCTTCAC AAAACCAAAT TTTGCACCTT
ACTGAGCGCG GTCAATTGTT AAGAAGGTTG TATAACGAAC TAGACATTGT ATTTGCTGAA
GCTATTTGCG AAGGAATTTT TAATGATCTT TCGCCGCTTG AATTATTATC GTGTTTGTCT
GCATTAGTTT ATGAATCTAG AGGACCTGCA GGGGGAGATC CTAGACGATA TCCAGGCGGC
AAGGATGGCG CGATATTTAA TACAGTATTG CGAATGAAAG AATTATTTAT GCGTACTAGC
GCATTATGCG CAGACGCTCA TTTGCCAGCG TTAAGACCGC TTGAATTTGG TGCTGTAGAT
ATTATGTATG ATTGGGCTAA TGGTGCTGAT CTAGCTGAAA TTTTGCGCAA TACTGACAGC
ACTGGAGGAG ATTTCGTGCG TCAAGCTAAA CGTCTTATTG ATTTACTTAC TCAACTTTTC
GCAGCAGGAG AATATTTACA ATCTATAGAT GGCGTAGATA AAAATCTTGC TTCGTGCGCT
TATGAAGCTG CAAAACTACT AAACCGTGGA GTTGTAGCAT ACTCAGATGT ATAA
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| Protein sequence | MSHLSQKKDC KNKSGNPTDC NENDVVLSPS QRFAAFKNTM KHEHSMASKF ERSLSFELDD
FQLEAIDALE NDNNVLVAAP TGAGKTVVAD FAVFLAQNRN VKAFYTTPIK ALSNQKYHDF
CELYGSDRVG LLTGDTSVNP EADIVVMTTE VLRNMLYEHS ITLQSLGFVV LDEIHYLADK
FRGAVWEEVI IHLPKSVKII GLSATVSNVE DFSAWLESVR GETHLIVDEH RPVPLERHVV
VQEDSATEPE LLDLYDHDNN GNVTKRVNPA LTRKLNEFEY RARRRKESYS DSKYRYRKGK
KHRVNGGVAQ LDKCAKRHTP RRWAVIDELD YLGMLPGIYF IFSRSGCDQA VQQCLNAGLI
LTSDEEMYEI RKIVDSMVAN QLSKEDLHAL SFERFRFALE QGFAAHHAGM IALFRHIVET
LFERGLIKVV FATETLALGL NMPARSVVVE KLVKFDGTGH VPLTPGEFTQ LTGRAGRRGI
DDIGYAILVD HADFVPQQAA ALSSKRVYPL HSSFVPTFNM AVNLLNSSDA DTARTTLDRS
FAQWEANASA ERLHNRMNEL ETALKGYEEA FHCEHGDFAE FLQLRMKLKE AQHDQRRKLK
HTLFRTDAER TAAFKALDDV IANLREAERT HPCAGCADIQ QHLRWGYHWI REHKELDQVR
ERYESRTGSV ARTFDHICDV LYSLDYLQSE DSSQNQILHL TERGQLLRRL YNELDIVFAE
AICEGIFNDL SPLELLSCLS ALVYESRGPA GGDPRRYPGG KDGAIFNTVL RMKELFMRTS
ALCADAHLPA LRPLEFGAVD IMYDWANGAD LAEILRNTDS TGGDFVRQAK RLIDLLTQLF
AAGEYLQSID GVDKNLASCA YEAAKLLNRG VVAYSDV
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