| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0786 |
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| Symbol | |
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| ID | 8709143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 890986 |
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| End bp | 891798 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482887 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374004 |
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| Protein GI | 283783250 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAGC AAGTATCAAA GTCAAATCCA AACGCCGAGG ATATGACTAA TCGCACTATT
TCAGTGCAAA AAGCGGCAAA TCCCCTCGTA GAACTAAGTC ATGTCGAAAA GCATTATGGA
AAACTTCATG TGCTTAAAGA CATCAATCTG ACCGTTAACA AAGGCGAAGT ACTAGTTATT
ATCGGTCCAT CTGGTTCTGG TAAATCGACA ATGTGTCGCA CAATTAACCG TCTCGAAACT
ATTGATTCAG GTGACATACG TATTGACGGT GAGCCACTTC CTCAAGAAGG AAAAGAACTT
GCAGCTTTGC GAGCAGAAGT TGGTATGGTA TTCCAGTCCT TTAATCTTTT CGCTAACAAG
ACTATTTTGG AAAATGTTAC TCTTGCCCCA ATGAAAGTGC GCCATATGGA TCAGCAAAGT
GCTGAATCTC TTGCTATGGA ATTGCTCACT CGAGTCGGAG TTGATAATCA AGCAAACAAA
ATGCCTTCAC AACTTTCCGG CGGCCAGCAG CAGCGTGTTG CAATTGCTCG AGCTCTTGCT
ATGCAGCCAA AAGTTATGCT TTTTGACGAG CCTACATCTG CACTAGATCC GGAAATGGTC
AATGAAGTTC TTGATGTCAT GGTTGAGCTT GCAAAAGAAG GCATGACTAT GATTTGTGTT
ACCCACGAAA TGGGATTTGC ACGCAAGGCA GCTGACAGAA TTGTATTTAT GGCAGATGGT
CAAATTCTTG AACAAGGCAC TCCTGAAGAA TTCTTTGAAC ATCCAAAAAC TGATCGTGCA
AAAGATTTCC TTTCCAAGAT TCTTACGCAT TAA
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| Protein sequence | MDKQVSKSNP NAEDMTNRTI SVQKAANPLV ELSHVEKHYG KLHVLKDINL TVNKGEVLVI
IGPSGSGKST MCRTINRLET IDSGDIRIDG EPLPQEGKEL AALRAEVGMV FQSFNLFANK
TILENVTLAP MKVRHMDQQS AESLAMELLT RVGVDNQANK MPSQLSGGQQ QRVAIARALA
MQPKVMLFDE PTSALDPEMV NEVLDVMVEL AKEGMTMICV THEMGFARKA ADRIVFMADG
QILEQGTPEE FFEHPKTDRA KDFLSKILTH
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