| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0759 |
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| Symbol | cas3 |
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| ID | 8709870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 860091 |
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| End bp | 862937 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 646482861 |
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| Product | CRISPR-associated helicase Cas3 |
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| Protein accession | YP_003373983 |
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| Protein GI | 283783229 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0254151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTGTA ATCACGTTGT TAATTCTGCA TTATGGGGTA AAAAGAGAGA AGCTAATGGA
GTAATGCAAT GGCTTCCTCT TGCTCAACAT CTTGAGGATA CTAGAAATGT TATTGGTCAG
CTGTGGGAGC ATTGGCTTAG TGGTGGTCAG AGAAGATTGA TTGAATCCTC ATTAAGCAAA
CGAGTTGATG CAAAAAAATT GTCTCAATTT TTAGGCTGTG TTCATGATAT TGGTAAAGCT
ACTCCTGTTT TTCAGTTTCG TAAATCGCCT TCAAATTCAA AAGATTTAGA TATTGCGTTA
AAAAATAAGT TAGCTACTGT TGGTTTTACA AATATTGATT ATTTTATTGA TACGACAGAA
GGTAGTCATA ATAGTCATCA CACTATAACT GGTCAATTTA TTCTTTCTAA TGCTGGAGTT
CCTGAAGGGA TTTGTGCAAT TGTTGGAGCT CATCATGGTA AGCCTTTAAA TAATGATTCT
GTTTGTAGAA GTAATAAGTC TAAATATCCT GACCATTACT ATCAAAGTGA AACTGAGAGT
GAAAATAGTA AATTATGGAA AAAGTTACAG AATGATATTT TGGATTGGGC TTTAGAAAGA
AATGATTTTT CTAATGTAAA TGATCTTCCT GAAATAAGTG AACCTGCGCA AGTTTTGTTG
TGCGGATTAG TAATTATGGC TGATTGGATT GCTAGTAATG AACACTATTT TCCGCTTATT
TCAATAGAGC AAGATTTGAT TGAAAATCAG GAAGAAAGAT ATAGAAAAGG TTGGGAAAAC
TGGTTACAGC ATGGTTCTAA AGACGTATGG GAATCGTTAA ATTGTTGTAG CAATGTTTCG
CAAACATACA AATATCGTTT TGGTTTCTTT CCAAATAATA TTCAGATAGC GTTGCATGAT
GTAATTTCTC AGTCTAAAGA GCCTGGAATT TTTATTCTTG AATCTGCAAT GGGTTCAGGT
AAAACAGAAG CTTCTTTAAT TGCTGCTGAG CAATTGGCAA ATCTAACTGG AAGAAGCGGA
GTGTTCTTCG GTCTTCCTAC TCAAGCCACT TCTAACGGAA TGTTTAGACG AGTTGAGGAT
TGGCTTAAAA ATGTGAATAG TGATTTCCAG GGCGAAATTG GTTTACGTTT AGTTCATGGT
AAAGCTGAAC TGAATGCAGA TTATGCGCAT TTGCAGCATG GAATGCAAAA TATGAATGAT
GGTTGTGAAA GTACTTCTAA TAGTAATGAT GTAAATAATA ATGGAGTAAT ACTTAATGAT
TGGTTTACGG GTCGAAAAAC CGCAATGTTG GATGACTTTG TGGTTGGTAC AGTAGATCAA
TTTTTGTTAG CTTCTCTAAA GCAAAAACAT CTTATGCTCC GTCATTTGGG TTTGAGTAAA
AAAGTTGTAA TTATTGATGA AGTGCATGCT TATGACGCTT ATATGAATAA GTATCTTGAA
GAATCTCTTA TTTGGATGGC GGCATACGGT GTTCCTGTAG TGTTACTTTC TGCTACTTTA
CCTGCTAAAC GTAGAAAAGA ACTTATAAAA GCTTATATGT GTGGATTGTT TGGGTTTAAT
TGGAGAGAAT GTGATAAATC TAATGTTGAT TTTGAAACAA ATAATTATCC TTTAATTACA
TACAGTGATA AAAACTGTGT AAAACAAAAA TTTATTGAAA ATGATGCTAG TGACAATAAA
TCTGTTTCTG TAAGGAAAAT AACAGACGAT AACTTGCATG AATCACTTGT TGGTGAGCTT
AAATCTTTGC TGAATAATGG TGGTATTGCT GGAATTATAG TGAATACCGT TAAAAGAGCT
CAGGAAATTT ATAATGCGTG TGTTGATGAG TTTAGTGATG ACGAAGTTAT AGTTATTCAT
TCGCAATTTA TCGCTACAGA TAGAGTTAGA AAAGAACAGC AAATTTGCAA TATGATTGGC
AAGAATGCTC ATAGACCTGC TCGTGCAATA ATTATTGGTA CGCAAGTATT AGAGCAGTCG
CTTGATATTG ATTTTGATGT TTTGTTTACT GATCTTGCTC CTATAGATTT ATTACTTCAA
CGTGCTGGCA GATTACACAG GCATACGATA GAACGCTCAG AAACTTTCGC AGAGCCAATT
TTATATGTGT TGGGAACCAG TGATCGTTAT GAATTTGATA AAGGTTCAGA GTCTATTTAC
AGCAAATATT TACTTATGAG AACTCAATAC TATTTGCCAA ATGTTATAAA CATGTCTCAT
GATATTTCTC GATTAGTGCA AATAGTTTAT GGCGATAATC CTTTAGAGTT ACAAGAAGAT
TTGAAAGATG TGTATGCTGT TGCAAAAAGA GAACATGATT CAGTAAGAAA TAGTAATGAA
AGTGCTGCAA AAACATATAG AATTGAAAAT CCAGAATCAG AAATTGGTGA AAAATCTATT
GTTGGCTTGT TGACAAATTC AATTACAAAT GAATCTGATG AATTTGCATG TGCTCAAGTT
CGTAATAGTG GTGAATCTAT AGAAGTTATT GCTGTTAAAA GAGTTGGATC CGGCTATGGA
ACTTTACATG ATTGTAAAGA TATTTCACAA AATATTGATG ATGTGGAAGT TGCAATGAAA
CTTGCTCAAG AGACAGTAGG ATTGCCGTGG ATGTTTACAT TAAACAGCGA TCGTGTTGAT
GAAACAATTG CAGAATTGGA AAGAATACGA AAACAAAATC AATTCAAAAA TTGGGATAAT
CAGCCTTGGT TGCGAGGTTC TTTGGTGCTT CTATTCGATG AAAATAATAT TTGCGAATTG
TCAAAATACA GAGTTGTTTA TTCTGAAAAA AGTGGTATTG TATGTATTAA GAGTTCGGAA
GAAGACAGAA AGGAATTAAG AAGGTGA
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| Protein sequence | MSCNHVVNSA LWGKKREANG VMQWLPLAQH LEDTRNVIGQ LWEHWLSGGQ RRLIESSLSK
RVDAKKLSQF LGCVHDIGKA TPVFQFRKSP SNSKDLDIAL KNKLATVGFT NIDYFIDTTE
GSHNSHHTIT GQFILSNAGV PEGICAIVGA HHGKPLNNDS VCRSNKSKYP DHYYQSETES
ENSKLWKKLQ NDILDWALER NDFSNVNDLP EISEPAQVLL CGLVIMADWI ASNEHYFPLI
SIEQDLIENQ EERYRKGWEN WLQHGSKDVW ESLNCCSNVS QTYKYRFGFF PNNIQIALHD
VISQSKEPGI FILESAMGSG KTEASLIAAE QLANLTGRSG VFFGLPTQAT SNGMFRRVED
WLKNVNSDFQ GEIGLRLVHG KAELNADYAH LQHGMQNMND GCESTSNSND VNNNGVILND
WFTGRKTAML DDFVVGTVDQ FLLASLKQKH LMLRHLGLSK KVVIIDEVHA YDAYMNKYLE
ESLIWMAAYG VPVVLLSATL PAKRRKELIK AYMCGLFGFN WRECDKSNVD FETNNYPLIT
YSDKNCVKQK FIENDASDNK SVSVRKITDD NLHESLVGEL KSLLNNGGIA GIIVNTVKRA
QEIYNACVDE FSDDEVIVIH SQFIATDRVR KEQQICNMIG KNAHRPARAI IIGTQVLEQS
LDIDFDVLFT DLAPIDLLLQ RAGRLHRHTI ERSETFAEPI LYVLGTSDRY EFDKGSESIY
SKYLLMRTQY YLPNVINMSH DISRLVQIVY GDNPLELQED LKDVYAVAKR EHDSVRNSNE
SAAKTYRIEN PESEIGEKSI VGLLTNSITN ESDEFACAQV RNSGESIEVI AVKRVGSGYG
TLHDCKDISQ NIDDVEVAMK LAQETVGLPW MFTLNSDRVD ETIAELERIR KQNQFKNWDN
QPWLRGSLVL LFDENNICEL SKYRVVYSEK SGIVCIKSSE EDRKELRR
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