Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0752 |
Symbol | |
ID | 8709557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 852019 |
End bp | 853305 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 646482857 |
Product | hypothetical protein |
Protein accession | YP_003373979 |
Protein GI | 283783225 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000194226 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGCAT TAGACATTTT TGATAAAATC TTCGACAATA TTCAAATTTC TAATAAAGAA GAAATTCGAA AGCTTAGAGA TGAAATTACA AAAGCTCTCA ATAAAGAATT TAGAAATTCA TATTCAAAAT CAGACAATTG GTTAATGGTA GGTTCATGGG GACGTCATAC TGCCATAGAT GGTGTTTCTG ACTTGGATTT ACTTTATATT CTGCCTTCTA GCTTATGGGA TGATTATCAT ACAATTGATG GCACAAAAAA GGTTTTGTCC AAAGTAAAAC AAGCTATAGT TACCCATTAT TCACGAACTG ATATTCGAGT AGATCGACTA GTTGTTGTAG TTAATTTCAA AAATTATAAA TTTGAAGTAC AACCTGTCTT TGAACAAGAT GATGGTTCAT TTTTGTATCC AGATACGTAT TCCGATTCTT GGAAAACAAC CAAACCTCGA GATGAGATCA AAGCTATATC CAATCTCGAC GAAACATCTA TGGGGAATGC TAGAAAAATT TGTAAGTTAG CCCGCGCATG GAAAAATAAA CATAGCGTTC TTATAGGTGG TCTTCTCATA GATACTATGG CATGGAGATT TCTCAATGAT AACGATGAAT ATTTTAACAC TGCAAATCAT CCTGATTATA TGATTAGGGA TTTCTTCGAA TATATAAGCA ATTTACCAAA GCAAGAATCA TGGAATGCTC TAGGTAGCAA TCAAAGAGTA AAGGTCAAGA AAAATTTTCA AGAAAAGGCT GCAGAAGCTT ATAATCTATG TCGTGCTGCT ATTGATGAAG TAGATGAAGA TAAGTCATAC ATGAAATGGC GGGAGGTCTT TGGAAGATTT GTTCCATTAA GTGACTACGA ACAAGTAGCC AAGGATCTTT TTACGTCGTA TGATGACACG GAACAGTTTA TCGAAAATTT TTATCCTATT GATTTACAAT ATGAGCTTAA TCTTGAGTGC AAAGTAACAC AAGATGGATT TAGACCAGCT AGTTTAAGAG ATATGATAAG AAATCATATT TGGCTTAAAC CAAACAAAAA ACTAGAATTT TATATAACAA ATACAGATCT CTCAACACCA TATAGTCTCA AATGGAAAGT ATGCAACTGT GGAGAAGAAG CTAAAAAACG AAATTGTATA AGAGGGCAAA TTATTGATGG TACAACCTCT AACACCAGAG AAGAACATAC GGTTTTTCGA GGGGAACACT ATGTTGAATG CTACGCTATA CACTACGGCG TGGTAATAAC AAGAGGTAAA ATCTCTGTAC CAATCACTAC AGACTAG
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Protein sequence | MSALDIFDKI FDNIQISNKE EIRKLRDEIT KALNKEFRNS YSKSDNWLMV GSWGRHTAID GVSDLDLLYI LPSSLWDDYH TIDGTKKVLS KVKQAIVTHY SRTDIRVDRL VVVVNFKNYK FEVQPVFEQD DGSFLYPDTY SDSWKTTKPR DEIKAISNLD ETSMGNARKI CKLARAWKNK HSVLIGGLLI DTMAWRFLND NDEYFNTANH PDYMIRDFFE YISNLPKQES WNALGSNQRV KVKKNFQEKA AEAYNLCRAA IDEVDEDKSY MKWREVFGRF VPLSDYEQVA KDLFTSYDDT EQFIENFYPI DLQYELNLEC KVTQDGFRPA SLRDMIRNHI WLKPNKKLEF YITNTDLSTP YSLKWKVCNC GEEAKKRNCI RGQIIDGTTS NTREEHTVFR GEHYVECYAI HYGVVITRGK ISVPITTD
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