Gene HMPREF0424_0752 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0752 
Symbol 
ID8709557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp852019 
End bp853305 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content34% 
IMG OID646482857 
Producthypothetical protein 
Protein accessionYP_003373979 
Protein GI283783225 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000194226 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTGCAT TAGACATTTT TGATAAAATC TTCGACAATA TTCAAATTTC TAATAAAGAA 
GAAATTCGAA AGCTTAGAGA TGAAATTACA AAAGCTCTCA ATAAAGAATT TAGAAATTCA
TATTCAAAAT CAGACAATTG GTTAATGGTA GGTTCATGGG GACGTCATAC TGCCATAGAT
GGTGTTTCTG ACTTGGATTT ACTTTATATT CTGCCTTCTA GCTTATGGGA TGATTATCAT
ACAATTGATG GCACAAAAAA GGTTTTGTCC AAAGTAAAAC AAGCTATAGT TACCCATTAT
TCACGAACTG ATATTCGAGT AGATCGACTA GTTGTTGTAG TTAATTTCAA AAATTATAAA
TTTGAAGTAC AACCTGTCTT TGAACAAGAT GATGGTTCAT TTTTGTATCC AGATACGTAT
TCCGATTCTT GGAAAACAAC CAAACCTCGA GATGAGATCA AAGCTATATC CAATCTCGAC
GAAACATCTA TGGGGAATGC TAGAAAAATT TGTAAGTTAG CCCGCGCATG GAAAAATAAA
CATAGCGTTC TTATAGGTGG TCTTCTCATA GATACTATGG CATGGAGATT TCTCAATGAT
AACGATGAAT ATTTTAACAC TGCAAATCAT CCTGATTATA TGATTAGGGA TTTCTTCGAA
TATATAAGCA ATTTACCAAA GCAAGAATCA TGGAATGCTC TAGGTAGCAA TCAAAGAGTA
AAGGTCAAGA AAAATTTTCA AGAAAAGGCT GCAGAAGCTT ATAATCTATG TCGTGCTGCT
ATTGATGAAG TAGATGAAGA TAAGTCATAC ATGAAATGGC GGGAGGTCTT TGGAAGATTT
GTTCCATTAA GTGACTACGA ACAAGTAGCC AAGGATCTTT TTACGTCGTA TGATGACACG
GAACAGTTTA TCGAAAATTT TTATCCTATT GATTTACAAT ATGAGCTTAA TCTTGAGTGC
AAAGTAACAC AAGATGGATT TAGACCAGCT AGTTTAAGAG ATATGATAAG AAATCATATT
TGGCTTAAAC CAAACAAAAA ACTAGAATTT TATATAACAA ATACAGATCT CTCAACACCA
TATAGTCTCA AATGGAAAGT ATGCAACTGT GGAGAAGAAG CTAAAAAACG AAATTGTATA
AGAGGGCAAA TTATTGATGG TACAACCTCT AACACCAGAG AAGAACATAC GGTTTTTCGA
GGGGAACACT ATGTTGAATG CTACGCTATA CACTACGGCG TGGTAATAAC AAGAGGTAAA
ATCTCTGTAC CAATCACTAC AGACTAG
 
Protein sequence
MSALDIFDKI FDNIQISNKE EIRKLRDEIT KALNKEFRNS YSKSDNWLMV GSWGRHTAID 
GVSDLDLLYI LPSSLWDDYH TIDGTKKVLS KVKQAIVTHY SRTDIRVDRL VVVVNFKNYK
FEVQPVFEQD DGSFLYPDTY SDSWKTTKPR DEIKAISNLD ETSMGNARKI CKLARAWKNK
HSVLIGGLLI DTMAWRFLND NDEYFNTANH PDYMIRDFFE YISNLPKQES WNALGSNQRV
KVKKNFQEKA AEAYNLCRAA IDEVDEDKSY MKWREVFGRF VPLSDYEQVA KDLFTSYDDT
EQFIENFYPI DLQYELNLEC KVTQDGFRPA SLRDMIRNHI WLKPNKKLEF YITNTDLSTP
YSLKWKVCNC GEEAKKRNCI RGQIIDGTTS NTREEHTVFR GEHYVECYAI HYGVVITRGK
ISVPITTD