Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0724 |
Symbol | clpC |
ID | 8709881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 820852 |
End bp | 823440 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646482829 |
Product | negative regulator of genetic competence ClpC/MecB |
Protein accession | YP_003373951 |
Protein GI | 283783197 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0978513 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGAAC GGTTCACTGA TCGCGCACGA CGCGTGATTG TGCTAGCTCA GGAAGAGGCT CGCTCACTTC AGCACAATTA TATTGGTACT GAGCATATTT TGCTCGGGCT TATTCGCGAA GGTGAGGGCA TTGCCGCGAA AGCGTTAAGC TCAAAAGGCG TAGGCCTAGA AGGCACTCGC AAACAGGTTG AAGAGATGAT CGGCAAAGGC ACTGTTTCGC CTGCTGGTCA TATTCCTTTT ACGCCTCACG CTAAGCAAGT GCTTGAACTG AGTTTGCGCG AAGCTCTTCA GCTTGGTCAC AGTTATATTG GTACTGAGCA TATTTTGCTA GGGCTTATAC GCGAAGGCGA AGGTGTGGGC ACGCAAGTAC TTATAAAGAT GGAAGTTGAT CTTGGAGACT TGCGAAGCAC TACTGTTGAT TTAATTCGTG GAGATAATGC TCCTAATGGT AGCGAGAAGG GCGAGTTAGC TAATGCTGGA AGTGTGCAAG ATAAGCGAAA TCAATCCGGC TCTGCTCTTC TTGATCAATT TGGACGCAAT TTAACATTTG AAGCTCAAGA AGGAAAGCTT GATCCTGTTA TAGGTCGTTC TGAAGAAATT GAACGCGTTA TGGTTGTACT TAGCCGACGC ACGAAGAATA ATCCTGTGCT TATTGGAGAG CCTGGAGTTG GTAAGACTGC AGTTGTAGAA GGTCTCGCAC AGAAAATCGT TGAAGGCGAT GTGCCGGAAA CGTTAAAAAA TAAGCAAGTT TATTCTCTAG ACTTAGGTTC AATGATTGCA GGATCTCGCT ACCGTGGCGA TTTCGAAGAG CGCTTGAAAA AAGTGCTTAA AGAAATTAAA ACACGCGGCG ATATTGTGCT TTTTATTGAT GAGATTCACA CTATTGTTGG AGCAGGTTCT GCTGATGGAG CTCTTGGTGC ATCCGATATG CTTAAACCAA TGCTTGCGCG TGGAGAGCTA CAGACAATTG GTGCTACTAC TACTGACGAG TATCGCAAGT ATATTGAAAA AGATGCTGCT TTGGAGCGTC GTTTCCAGCC GATTCAAGTT CCAGAACCTA CAATTGCTGA AACTATCGAG ATTCTTAAAG GATTGCGTTC TCGCTACGAA AATCACCATC ATGTAACTAT TACCGATGGA GCTTTACAGT CTTCTGCTGA GCTTTCTGAT CGTTACATTC AAGATCGTCA CCTTCCAGAT AAGGCTATTG ATCTTATTGA TGAAGCTGGT GCGCGCTTGC GTATTAAGCG CTTGACTCAG CCGCCTGAGC TCAAAGAATT AAACCATAAG ATTGCTAAGA TTTCCGAAAA GAAAGATGAA GCAATCAAGC AGCAAGATTT TGAAGAAGCT GCCAATCTTC GCGACGATCA AGAAAAGCTT GAGAATGAAG CTGCAGAGAA GGAAAAGGCT TGGCGCGAAG GCGAGTCTAA CGTCAAGATG GTTGTTGATG AAGACATGAT TGCTTCCGTT GTTTCGAGCA CTACAGGCAT TCCTGTAGTA AAGCTTACTC AAGCGGAATC ACAGAAGCTT CTTCAAATGG AATCTGAACT TCACAAGCGT ATTGTTGGTC AAGATGAAGC TGTGTCTGCT TTAGCTCGCT CGATTCGTCG TGCTCGAGTT GGTTTGAAGG ATCCTAAACG TCCTTCTGGA TCGTTTATTT TTGCTGGTCC TACTGGAGTT GGTAAAACTG AGCTTGCCAA GGCGCTTGCA AACTTCTTGT TTGATGACGA TAATGCCTTA ATCAGAGTTG ACATGTCAGA GTTTGCAGAA AAGTATGCTG CGTCTAGGCT TTTCGGTGCT CCTCCTGGAT ATGTTGGATA TGAAGAAGGT GGCGAGCTTA CTGAAAAAGT TCGCAGAAAG CCATTCTCTG TGGTGCTTTT CGACGAGATT GAAAAAGCTC ATCCAGATAT TTTCAACACG CTTTTGCAAG TACTCGATGA CGGTCACTTA ACAGACGGTC AGGGTAGAAA AGTGGACTTT AAGAATACGA TTATTATTCT TACCACCAAT CTTGGTACTC GCGATATTGC GAAGGCTGCA AATACTGGCT TTACACTTGG AAATAACGCT GATTCCACGT ATCAGCGCAT GAAAGATCAG GTTAATTCTG AGCTTAAGCG TCATTTCCGT CCAGAGTTCT TAAACCGTTT GGACGACACT ATTGTGTTCC GTCAGCTTAC GGAGCCAGAA GTTCGTCAAA TTGTTGACAT GGACGTGAAG TTGCTTAACG ACAGGCTGTT TGATCGTCAC ATGTCTCTAG AAATTACGGA TGCCGCTAAG AATTTGCTTG CACAGAAAGG CTTCGATCCT TTGCTTGGTG CACGTCCGTT GCGTCGCGTA ATTCAGCGAG ATATTGAGGA TACTATTTCT GAAAAGATTT TGCTTGGTGA ACTTTCTGAC GGCGAACACA TTAAGGTGGA TGCTGAAGGC GAAGGATTGC TGGGGGAGTT CACAATTAAA GGCGAAAAGT TTGAGACAAT AGACACAACT GCTGCTGTTG CTACTGAAGA AAATAAGTCT GAAGAAAATA AATCTGAGGA TAATAAGTCT GAAGATAGCG AAAAAGAAGA TAGCAATAAG AATAAGTAA
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Protein sequence | MFERFTDRAR RVIVLAQEEA RSLQHNYIGT EHILLGLIRE GEGIAAKALS SKGVGLEGTR KQVEEMIGKG TVSPAGHIPF TPHAKQVLEL SLREALQLGH SYIGTEHILL GLIREGEGVG TQVLIKMEVD LGDLRSTTVD LIRGDNAPNG SEKGELANAG SVQDKRNQSG SALLDQFGRN LTFEAQEGKL DPVIGRSEEI ERVMVVLSRR TKNNPVLIGE PGVGKTAVVE GLAQKIVEGD VPETLKNKQV YSLDLGSMIA GSRYRGDFEE RLKKVLKEIK TRGDIVLFID EIHTIVGAGS ADGALGASDM LKPMLARGEL QTIGATTTDE YRKYIEKDAA LERRFQPIQV PEPTIAETIE ILKGLRSRYE NHHHVTITDG ALQSSAELSD RYIQDRHLPD KAIDLIDEAG ARLRIKRLTQ PPELKELNHK IAKISEKKDE AIKQQDFEEA ANLRDDQEKL ENEAAEKEKA WREGESNVKM VVDEDMIASV VSSTTGIPVV KLTQAESQKL LQMESELHKR IVGQDEAVSA LARSIRRARV GLKDPKRPSG SFIFAGPTGV GKTELAKALA NFLFDDDNAL IRVDMSEFAE KYAASRLFGA PPGYVGYEEG GELTEKVRRK PFSVVLFDEI EKAHPDIFNT LLQVLDDGHL TDGQGRKVDF KNTIIILTTN LGTRDIAKAA NTGFTLGNNA DSTYQRMKDQ VNSELKRHFR PEFLNRLDDT IVFRQLTEPE VRQIVDMDVK LLNDRLFDRH MSLEITDAAK NLLAQKGFDP LLGARPLRRV IQRDIEDTIS EKILLGELSD GEHIKVDAEG EGLLGEFTIK GEKFETIDTT AAVATEENKS EENKSEDNKS EDSEKEDSNK NK
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