Gene HMPREF0424_0689 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0689 
Symbol 
ID8709935 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp776942 
End bp779332 
Gene Length2391 bp 
Protein Length796 aa 
Translation table11 
GC content40% 
IMG OID646482794 
Productkinase domain protein 
Protein accessionYP_003373916 
Protein GI283783162 
COG category[K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0515] Serine/threonine protein kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGAAG CTACGCAGGC GCAGCCAGGT ATGCGCATTG AAAATCGCTA TCGCATTGTG 
CGCAAAATAG CTCAGGGTGG CATGGCTACT GTGTATCAAG CAGAAGATGA ACGCCTTGAT
AGACCTGTAG CAATTAAAAT CATGCACACT CAACTTGCTC AAGGGGTGCA TCGCCAGCAA
TTTATTGCTA GATTCCGCAG AGAAGCAACT TCTGCTGCAG CAATTGCAAA TCCACATATT
GTACAAGTTT ATGATACAGG CGAATATGAC GGGCTCGATT ATCTCGTAAT GGAATATGTT
CATGGCGTTA ATTTGCGTTA TGAAATGAAT ATGCAAGGCA CATTCAGTGT GCGAGATACG
CTGCGTCTAC TTGCAGAAAC TTTGGATGGT CTCGCTTCTG CACATAATGC TGGAGTTGTA
CATAGAGATA TTAAGCCGGA AAATATTTTA ATTAACGATC GAGGTCATGT TCAAATTACT
GATTTCGGTT TAGCTAGAGC AATTTCGCAA GCAACACTAT CTTCTACAGG ATTACTTCTT
GGCACAGCAG CTTATCTTGC TCCTGAACTT ATTGAGCATA ATCTTGCAAC TCCTCAAGGT
GATTTGTATT CAGCAGGCAT GATGGCTTGG GAAATGCTTG CAGGAAGAGT GCCTTTTACT
GCAGATAATC CTGTTACGCT TGTTTTCAAG CATGTGCATG AAAACACTCC TTCAATTGCT
ACAGCTTGCC CTGGAATTAG CGAAAAAGTT GCACAATTCA TAGCAAACCT CACTGCTCGC
GACATGAACG AACGACCTAA AGATGCAAGT GAAGCATTAG CAAAATTACG TGCACTTTCT
ACACAATTAA ACTCTGAAGA TTGGCAATAC AAAGCAGAAG AACCACAAGA GTTTTCAGAA
GAAACAGACT TTTCTCCTAT TAATAATTTG CTTGTTTCCC CTGAAGCAAA TTATTCGGAC
AAATTGAATC CTAATAATGA CTCAGATGCT ACACGAGCAA TAAATACTTC AGGCTCTAAT
TTTTCTGCTA ATTCCAACTC TTTATTGCAA AATGCTACAG ACGAAACTGT TGCAATACCT
AGAAATAATT CTGTAAGTGA ACTCGATTCA CACAAAAATA ATGATTTACA TAATCCTGAA
GTCAATAATG TAGCAATAGA CAATTCACTA GCGAAGTCCG ACAGTGCTTT CGATGCGAAT
AATCTTCAAA AAACACAAGC TATGCAATGG AGTGCTGCTA ATGCAAAAGA TGTGTCATAC
AATTCGCAAG ATAATTCTTT AGAAGAATTT GACGATAGCA ATATGCCAAC AATTGCTATT
AGCTCTCGCA ATTTTAACAA CAACTTAAAT GCAGCAAAAC CGTTTGGCAT GTCAGATAAG
GAAAAAAACT TAGGAAACAA GCCTAATCGT TCTTCTAAAA AGCGTGTTTT CCTTATTGCA
GGTTTAAGCA CAGCTGGAGT ATTAGCAATT GCTGCTATTG GTGGTTTTTG GTATTTCTTA
GGTCCTGGCA GTTATTGGAC GCTGCCTAAG CCCGACGACC TTCAATGCAA AAATTATGCA
TCTTGCAAAA TAACTGATGT CAATTGGCAA CAATATGAGC ACACGCTTAA AATTGCTGGA
ATTCCTTACA AAGTTTCAAA AGATTATAGT GACGATGTGC CAGAAGGAAA AGTAGTTTCA
ACAAATCCTG ATGTCGTCGG CAGCCATATT CAAAAGCACA ATAATAGCAC TCTTAATGTT
GTGATTTCGC GTGGAATTCG TAAGGCTACA ATCCCGGACG ATATTACAGA TCCAAAGACT
TACAATGGCA AAAATCCTTT GAAAACATTG CGTAAAGCAG GATTTACTAA CATTGTTCAC
GATAAGTCAG GAGACACGTA TTCTATAGAC ATACCAGCTG GCAGCTTAAT TGATATTAAC
CCTAAACCTG GCACACGCAT GAACCATAAC GAAGAAGTAA GTGTTTTACT TTCCAAGGGA
CCTAAGCCTG TGCAAATGCC AGATATTGTT GGGAAAACAA AGAGTGAAGC TGACTCAGCT
TTAACTGACG CTAAGCTGGA TGTAAAGTAC GAAGAAGAAA ATAGCGATAC TGTAGCAAAG
GGTAAGATTA TCCGCGCTTC CGTTGAAGCT GGTTCTGACT TACATTGGGG CGATAGTGTT
AAAGTTGTTG TTTCTAAAGG TCCAAAAACT GTTACATTGC CAAACGTTTG CGGAAAGAAC
AGTGATGAAG CTAAAAGGAT TATTGAAAAT CTAGGACTGA AAGTTCGTAT TTCTGCTCCA
CTTGGTGATT TAATGCACGT AGTGCGCTTC CAATCCCCTG GAGCTGGAAG TGAAGTACCA
TTGAAGGATT CTAATGGAAA TCCTTCTATT ATCACTCTTA CAGTAATATA A
 
Protein sequence
MDEATQAQPG MRIENRYRIV RKIAQGGMAT VYQAEDERLD RPVAIKIMHT QLAQGVHRQQ 
FIARFRREAT SAAAIANPHI VQVYDTGEYD GLDYLVMEYV HGVNLRYEMN MQGTFSVRDT
LRLLAETLDG LASAHNAGVV HRDIKPENIL INDRGHVQIT DFGLARAISQ ATLSSTGLLL
GTAAYLAPEL IEHNLATPQG DLYSAGMMAW EMLAGRVPFT ADNPVTLVFK HVHENTPSIA
TACPGISEKV AQFIANLTAR DMNERPKDAS EALAKLRALS TQLNSEDWQY KAEEPQEFSE
ETDFSPINNL LVSPEANYSD KLNPNNDSDA TRAINTSGSN FSANSNSLLQ NATDETVAIP
RNNSVSELDS HKNNDLHNPE VNNVAIDNSL AKSDSAFDAN NLQKTQAMQW SAANAKDVSY
NSQDNSLEEF DDSNMPTIAI SSRNFNNNLN AAKPFGMSDK EKNLGNKPNR SSKKRVFLIA
GLSTAGVLAI AAIGGFWYFL GPGSYWTLPK PDDLQCKNYA SCKITDVNWQ QYEHTLKIAG
IPYKVSKDYS DDVPEGKVVS TNPDVVGSHI QKHNNSTLNV VISRGIRKAT IPDDITDPKT
YNGKNPLKTL RKAGFTNIVH DKSGDTYSID IPAGSLIDIN PKPGTRMNHN EEVSVLLSKG
PKPVQMPDIV GKTKSEADSA LTDAKLDVKY EEENSDTVAK GKIIRASVEA GSDLHWGDSV
KVVVSKGPKT VTLPNVCGKN SDEAKRIIEN LGLKVRISAP LGDLMHVVRF QSPGAGSEVP
LKDSNGNPSI ITLTVI