| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0685 |
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| Symbol | secA |
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| ID | 8710022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 772494 |
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| End bp | 775289 |
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| Gene Length | 2796 bp |
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| Protein Length | 931 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482790 |
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| Product | preprotein translocase, SecA subunit |
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| Protein accession | YP_003373912 |
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| Protein GI | 283783158 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTAGATA TCGTCGATAA AGCCTTGCGT ATGGGTGAAG GCCGTCAATT GAAGCGCCTT
GAGAACGTAG CAAAGGCTGT GAATGCGTTG GAAGATGAAA TTTCCGCGCT TTCCGATGAA
GAATTGAAGG GTCAAACTGC TAAATTCAAG CAGCGTTTAG ACAATGGTGC AAAGCTTGAT
GATTTGATGC CTGAAGCTTT CGCTACTGTG CGAGAGGTTT CAAAGCGTAC GCTTGGCCAG
CGTCATTTCG ATGTGCAGCT TATGGGTGGT GCTGCATTGC ATTGGGGCAA TATTGCAGAA
ATGAAAACTG GTGAAGGTAA AACATTGGTT GCTACTTTGC CAAGCTATCT GAATGCTTTG
GAAGGCAAAG GTGTGCACGT TGTCACAGTC AACGATTACC TTGCTAGCTA CCAGAGCGAG
CTTATGGGTC GTATTTATAG ATTCCTTGGC ATGAGTGTTG GATGCATTAT TACAGACCAG
CAGCCGCCAG AGCGTCGTAA GCAATACAAT GCTGATATTA CTTACGGTAC AAATAATGAG
TTTGGCTTCG ATTACTTGCG TGATAACATG GCGTGGGAAA AGAGCGAGCT TGTGCAGCGC
GGTCATCACT ATGCAATTGT CGATGAGGTC GATTCCATTC TTATCGATGA GGCTCGTACG
CCACTTATTA TTTCAGGTCC TGCTGAAGGT GATGTAACTC ATTGGTATCG TGAATTTGCA
AAGCTTGTTT TGAAGCTTAC TCGCGATGTT GATTACGAGA TTGATGAAAA GAAGAAAACC
GCAGGTATTC TTGATCCTGG CATCGCAAAA ATTGAGGATT ACTTGGGCAT CGATAACCTT
TATGAGCCAA GCAATACAGC TCTTATTGGT TATTTGAATA ACGCTTTGAA AGCTAAGGAG
CTTTTCCTTC TAGATCGTGA CTATGTTGTT ACAAACGGCG AAGTTTTGAT TGTCGATGAG
CATACTGGTC GTGTTCTTCC AGGTCGTCGT TATAGCGAGG GCTTGCATCA AGCAATTGAA
GCTAAGGAAA ACGTGGAAGT CAAGGCAGAA AATCAGACTT TTGCTACTAT TACTTTGCAA
AACTACTTCC GCATGTACGA CAAGCTTGCT GGTATGACTG GTACTGCTGA GACTGAAGCT
GCAGAGTTCA TGGGAACTTA CAAGCTTGGT GTTCTTCCAA TTCCTTCCAA CCGTCCAGTA
ATTCGTAAAG ATAAGGACGA TTTGATCTTC CGCACAAAGA AAGAAAAGCT TACTGCTATT
GTGCGAGATG TTGCTGAGCG TCATGCAAAG GGTCAGCCTG TGTTGCTTGG TACAGCTTCT
GTTGAATCTT CTGAGATTCT TTCTTCGCTT CTTGACGTTG CTCGCATTCC TCACCAGGTT
TTGAATGCTA AGCAGAATGC TAAGGAAGCT GCTGTTGTTG CTGTTGCAGG TCGTAAGGGT
GCTGTAACTG TTGCTACTAA CATGGCAGGT CGTGGTACCG ATATTATGCT TGGCGGCAAT
GTTGAGTTCC TTGCAGATGC TAAGTTGAAG GCTGAAGGAT ATTCTCCAGA CGATACTCCT
GAAGAGTATG AGAAGCGTTG GCCAGGCGTT TTAGCTGAAG TTAAAGAGCA AGTTAAGGAC
GAGCACGAAG AAGTTAAGAA TCTTGGTGGC TTGTATGTAC TTGGTACTGA GCGTCACGAA
TCTCGTCGTA TTGATAACCA GCTTCGAGGT CGTTCTGGCC GTCAGGGTGA TCCTGGCGAG
TCCCGCTTCT ACTTAAGCTT GGAAGATGAT TTGATGCGCC TGTTCAACAC TCAGCTTGTT
GCTCGTGTTA TGGCTAAGGG ATTGCCAGAA GGCGAACCAA TTGAGTCTAA GTACGTTTCT
AACGGTGTGC GCACGGCACA GAAGACTGTT GAAGCTCGTA ACTTTGAAAT GCGTAAGAAC
GTTTTGAAGT ATGACGATGT TATGAATAAG CAGCGTACTG TGATTTATGC AGAGCGTCAG
ATGGTTCTTA AGGGTGAAGA TATTCACGAG GACATCTTGA AGTTCATCAG TGACACCGTA
GAAAGTTATG TGCGTGGCGC AATGAACGGT TCTGATAAGC CAAAGAATTG GGATTTGGAC
GGCTTAAAAG ATGCTCTTAA CTCTGTAATG CCTGTACTTC TTGATTGGGA TCAGGTGCGT
GAAACGATTA TCAATCTTAA GGGCGAAAAA GCTGTTTCTG CTTTGCGTGA TTTGATTGTC
GACAGTGTAG TAAAGGTTTA CTCTCTCATC GAAGATCGTC TCGGCGCTGA TCCACTTCGT
CAAATTGAAC GTCGCGTTGT TCTTTCTGTT CTCGATCGCA AGTGGCGTGA ACATCTTTAT
GAGATGGATT ATTTGAAGGA TGGTATTGGT CTGCGTGGTA TGGGTCAGCG TGATCCGCTC
GTTGAATATC AGCGTGAAGG CTACCAGATG TACAATTCGA TGATTGAGGC AATTAAGGAA
GAAAGCATTC AGCTTCTATT CCACATTGAT ATCAATCAGA TTGCTTCTAC TGAAGATATT
TCTTCTGACG ATGAGCTTGA TGAAGATGTT GCACAAGCTT CGTCTGAGGT AGATGCTGAA
GATCAGGCTG CTGGTATTGT TGGTCCTGCA CCTTTGAGTC ATGCTGAGGG AGATGTTCCG
TTGAGCATGC GACCAAAGAA TGAAGAATGG AAGACTCCAT GGTCTGATGG TCGTACATTC
CCAGGAACAA ATAAGAATGA AGAGTGCCCA TGTGGTTCTG GTCGTAAGTA CAAGCTTTGC
CATGGTCAAA ACGAATCTGA AAATGAAGCT GAGTAA
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| Protein sequence | MVDIVDKALR MGEGRQLKRL ENVAKAVNAL EDEISALSDE ELKGQTAKFK QRLDNGAKLD
DLMPEAFATV REVSKRTLGQ RHFDVQLMGG AALHWGNIAE MKTGEGKTLV ATLPSYLNAL
EGKGVHVVTV NDYLASYQSE LMGRIYRFLG MSVGCIITDQ QPPERRKQYN ADITYGTNNE
FGFDYLRDNM AWEKSELVQR GHHYAIVDEV DSILIDEART PLIISGPAEG DVTHWYREFA
KLVLKLTRDV DYEIDEKKKT AGILDPGIAK IEDYLGIDNL YEPSNTALIG YLNNALKAKE
LFLLDRDYVV TNGEVLIVDE HTGRVLPGRR YSEGLHQAIE AKENVEVKAE NQTFATITLQ
NYFRMYDKLA GMTGTAETEA AEFMGTYKLG VLPIPSNRPV IRKDKDDLIF RTKKEKLTAI
VRDVAERHAK GQPVLLGTAS VESSEILSSL LDVARIPHQV LNAKQNAKEA AVVAVAGRKG
AVTVATNMAG RGTDIMLGGN VEFLADAKLK AEGYSPDDTP EEYEKRWPGV LAEVKEQVKD
EHEEVKNLGG LYVLGTERHE SRRIDNQLRG RSGRQGDPGE SRFYLSLEDD LMRLFNTQLV
ARVMAKGLPE GEPIESKYVS NGVRTAQKTV EARNFEMRKN VLKYDDVMNK QRTVIYAERQ
MVLKGEDIHE DILKFISDTV ESYVRGAMNG SDKPKNWDLD GLKDALNSVM PVLLDWDQVR
ETIINLKGEK AVSALRDLIV DSVVKVYSLI EDRLGADPLR QIERRVVLSV LDRKWREHLY
EMDYLKDGIG LRGMGQRDPL VEYQREGYQM YNSMIEAIKE ESIQLLFHID INQIASTEDI
SSDDELDEDV AQASSEVDAE DQAAGIVGPA PLSHAEGDVP LSMRPKNEEW KTPWSDGRTF
PGTNKNEECP CGSGRKYKLC HGQNESENEA E
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