| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0682 |
|---|
| Symbol | |
|---|
| ID | 8709249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 770351 |
|---|
| End bp | 771031 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 646482787 |
|---|
| Product | HAD hydrolase, family IA, variant 3 |
|---|
| Protein accession | YP_003373910 |
|---|
| Protein GI | 283783156 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAC AAAATAATTC GTCTATTGTT GCAGCGATTT TTGATTTTGA CGGCACGTTA
CTTGATTCTT TAAGCGTTTG GGATGATATT GATCGAGTAA GTTTTGCGAA ACGTGGTATG
AACGTTCCTT CAATCTTTGC GAATACGACT GCAACAATGA ATCCTAGACA AATTGCAGAA
TATGTTATTA AAAATTACGG ATTTACTGAT GCTCCTGAAG ATTTGATGAC GGAGTGGTCA
GATATGGCTT TTGACGCTTA TGCTAATCAT CTTCCGCTAA GAAAAGGCGC GTATGAATAT
GTGCATTATT TGCGTTCTAA TGGTATAAAG CTTTTTCTTG TTACAACTCT TTCTAAACGC
TTGTGTATTC CAGCTTTAAA AAGAGTTGGC ATTTTTGATT GTTTTGATTT TCTTCATTTT
GGAGAAGATT TATCTGAAAA AGGTAAGCAT AGTCCTAAAA CTTATATCGA TATTGCTAAT
CAACTTAAAG TAGATCCAGC TAAATGTGTA GTTTTTGAAG ATTCTGCTAC AGCTTTATGT
TCAGCTCAGC AAGCTGGTAT GCAAACATGT GGGGTAGTTG ATAATTCAAA CGTAAAAATT
GATTTAGATT CGTCGTTTAA TAAATGCTTA GCAGTATTTT CTGATTTTTC TTTCGCTCCA
AGAATCAGCG ATATAAGTTG A
|
|---|
| Protein sequence | MDLQNNSSIV AAIFDFDGTL LDSLSVWDDI DRVSFAKRGM NVPSIFANTT ATMNPRQIAE
YVIKNYGFTD APEDLMTEWS DMAFDAYANH LPLRKGAYEY VHYLRSNGIK LFLVTTLSKR
LCIPALKRVG IFDCFDFLHF GEDLSEKGKH SPKTYIDIAN QLKVDPAKCV VFEDSATALC
SAQQAGMQTC GVVDNSNVKI DLDSSFNKCL AVFSDFSFAP RISDIS
|
|---|
| |