| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0657 |
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| Symbol | mfd |
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| ID | 8708796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 738523 |
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| End bp | 742131 |
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| Gene Length | 3609 bp |
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| Protein Length | 1202 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482763 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003373887 |
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| Protein GI | 283783133 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCTG ATAGCAGGTC TAATATCAAA AACAACAAGA ATGATAAGAC TGATGATATT
TCAGCAATAA GCTTGAGAGA TATTCTTAAT GATTTATCAA CTAAGGATTC ACTTTTTAAA
GCTTTATCTG AATATAATCT TGATGCGATA TCTGATTATT GTTGCGAAAG TGCAAATAAA
AATCGTAAAG ATTTAGATTC AATAAGTGGA GATTTAACAA TTTCTTCTCC TATTGGCATT
CGTTCTGCTA TTGTTGCTGC ATTAGCTAAG AAAAAGCCGG TTGTTGTTAT TGTTCCATCG
AGTAGAGATG CTGAAGATTT TATTGCATCT GTACGTGATT GGTACGATGG TGATGCTCAA
GACGTTGCTA AATTAGAAGC GTGGGAAACG TTACCTCATG AAAGGCTTTC GCCTAGAGCA
GATACTGTTG CTAGCAGGAT TGCAGTGTTT CGTAGGCTTT GCCATCCTGA AAATAACACA
TCACTTTTTG GTCCGATTCG CGTGTTGGTT ATGCCTGTGC GATCGCTTAT TCAGCCTGTA
GTTGAGGGCA TTGGTGATAT AGATCCTCTG TTATTTGAGT GCGGAAAAGA ATTAACTCTT
GAATATGCTG TGAAACGTTT GGTAGAAAAC GCATATAATC GTGTTGATTT GGTGATGGAA
CGCGGAGAGT TTGCTGTTCG CGGTGGAATT ATTGACGTTT TTGCGCCAAC GATGACACAT
CCTGTGAGAA TTGAATTTTT TGGTGATGAA ATTGATACTA TAAAGCAATT TCATGCTTCT
GATCAGCGCA CTTATGGCAA TAATATTGCA AGTATTTGGG CTACGCCTTG TCGTGAGCTT
CAGATTACAG AAAAAATTTG CAAGCGTGCG CGTTCTCTTA TTGGCTCAAT TCCAAATGCT
GACGATATGC TTGAATCAAT CGCAAATTCT ATACCTGTAG AAGGTATGGA GTCTTTGTTG
CCTGCACTAG TTGATCGCAT GGAATCAGTG CAAAATATGC TTCCAAAGGA ATCTGTTATT
ATTCTATCTG ATCCCGAAAA ATGCCGTAGA GCTGCAGATG ATGTAACTGC TACAGCTAAC
GAATTCTTAG CAGCTAGTTG GCATGTTGCT GCTTCTGGTC ACGGTTCTGG AGCTCCAATA
ACATTCGATC AAGCTAATTT CTTGGATTTT GATGAAACGA TTTCATCGTT AGAATTGTCT
AATCATGACG TATGGAAATT AACATCTTTT GGTGTTGACA ATCAAATTTA TGGAAATATT
GCTTTGCCAG CATCGGCGCC ACAAGAGTTT CGAGGAGATG AATCGAAAGT TTCTGGCGGC
ATCACTTCTC TTGTTGACAA TGGTTTTGCT GTAACTATTA CTGCAGCTGC TTCTGGTACT
CTTGCACGCT TGAGGCGCGC TATATATGCG ACTGGTGTAC ATGAATTTAC TACAGTGCGC
TCAAGTATTT CGGATGGCTT CATTGATAAT GTTGCGCGTA TCGCGATTCT TACAGAGCGT
GATCTGACAG GTAAATCTTC TGCATCAGCT CAACTAAAAA CTCCAAAACG CAGGCGCAAA
GCAATCGACC TAATGGAACT AAAGCCTGGT GATTTCGTTG TGCACGAGCA GCATGGTATT
GGACGTTTTG TTGGCATGAA ACAACGTAAT ATTGCTGTTT CGGGTGGCAG TGCAACTCGC
GAATATTTAG TCATTGAATA TGCTCCTAGC AAACGTAACG CTCCTAACGA TAAGCTTTTT
ATTCCAACTG ATCAGCTTGA TTTAGTGAGT AAATATATAG GTGCAGAAAT ACCAAAGCTT
AACAAGCTCG GAGGTTCCGA CTGGGCTCAA ACTAAAGCAA AGGCTAAAAA GCATGTTCAT
GAAATTGCTG AAAATCTTAT TAAACTTTAT TCAGCAAGGC AGCAATCTCG CGGATTTGCA
TTTAGTAAAG ATACTCCTTG GCAAAAAGAG TTGGAAGACG CATTTCCTTA TCAAGAAACT
GCTGATCAGC TTACAACTAT TGATGAAGTA AAAGCAGATA TGGAAAACCC AATCCCAATG
GATCGCTTAA TTTGTGGAGA TGTTGGTTTT GGTAAAACTG AAATTGCGTT ACGTGCAGCT
TTTAAAGCTG TGCAGGATTC CAAGCAAGTT GTTGTTTTAG TTCCAACGAC CTTGCTTGTT
CAGCAGCATT ACGAGACTTT TACAAATCGC TTTGAAGGAT TCCCTGTAAA AGTTGCTGCA
ATGAGTAGAT TCCAAACTTC TAAAGAGATT GAAGAAACTT TAGCTGGATT GCAAGATGGA
AGCATTGACG TTGTTATTGG AACGCATAAG CTTTTGAATC CTAGTATAAA GTTCAAAGAT
TTAGGTTTGG TTATTATTGA CGAAGAGCAG CGTTTTGGTG TGGAACATAA GGAAACGCTT
AAAGCTTTGC GCACAAACGT TGACGTATTA AGTCTTTCGG CAACGCCAAT TCCTAGAACT
CTTGAAATGG CTGTAACTGG GATTCGTGAA ATGTCTACTC TTGCAACTCC TCCAGAAGAT
AGGCTTCCAG TGCTTACATA CGTTGGTGCG TATGATAATT CTCAAGTTGC TGCATGCATT
AAGCGTGAAT TGTTGCGTGG GGGTCAGGTT TTTTACGTCC ATAATCGCGT TGAAGATATT
AGTTCTGTTG CAAGTAAGAT TCAGGAGCTT GTGCCAGATG TTCGTGTTGC TATTGCTCAT
GGAAAAATGG GTGAGAAGCA GCTCGATGCT GTTATTCGTG ATTTTTGGCA TAGAGATATT
GATGTGCTTG TTTGTACAAC GATTATTGAA ACAGGTCTTG ATATTTCTAA TGCGAATACA
CTTATTGTCG ATCACGCAGA TAGATTCGGT TTAAGCCAGT TGCATCAGCT TCGTGGTCGA
GTAGGTAGAG GTCATGAGCG TGCTTACGCT TACTTTTTGT ATGATCCGTC TAAGCCTATG
ACACAACAAT CTCACGATAG GCTCTCAACA ATTGCTCAGC ATACTGCGCT TGGTTCTGGT
TTTGATGTTG CGATGAAAGA TTTGGAATTG CGCGGAACTG GAAATTTGCT TGGAGATGAG
CAAAGTGGAC ACATTGAGGG TGTTGGATTT GATTTGTATG TTCGTATGGT TTCTGAAGCT
GTTGAAAAAT ATAAGGAACC TGAAAGAGTT GAGCCTGTTT GCGTAACTAT TGATCTTCCT
GTTGAAGCTT CTCTTCCAGT TGATTATATT GCCTCTGACA AGCTTCGTTT GGAAGCGTAC
AGGAAGCTTG CTGCTGCTAA GGATAATAGT GATTTGCAAG AACTTCACGA TGAGCTTCTT
GATCGCTTTG GTAATCCACC TGAAGAGTTT GAGTCTTTGT GTGATGTTGC TCGTTTGCGT
TTTAAAGCAC GCGAGATTGG TATTACGCAA ATCAGCTCTC AAGGAAAATC AGTGCGAGTT
GTTGGCATCG ATCCAAAAGA GTCTGTGATG ATGCGTTTGA AGCGTATTTA TAAAGGATTG
CAGTATCGTC CTCTTACTCA TATGCTTATT GTTCCAGCTC CTTTTGAATC TTCACTCGGG
TCTGGTTCAA TGAGTGAATC AGATATTCTT AAGTGGTCTA AGCAATTACT TGAAGACTTA
GCGTGGTGA
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| Protein sequence | MAADSRSNIK NNKNDKTDDI SAISLRDILN DLSTKDSLFK ALSEYNLDAI SDYCCESANK
NRKDLDSISG DLTISSPIGI RSAIVAALAK KKPVVVIVPS SRDAEDFIAS VRDWYDGDAQ
DVAKLEAWET LPHERLSPRA DTVASRIAVF RRLCHPENNT SLFGPIRVLV MPVRSLIQPV
VEGIGDIDPL LFECGKELTL EYAVKRLVEN AYNRVDLVME RGEFAVRGGI IDVFAPTMTH
PVRIEFFGDE IDTIKQFHAS DQRTYGNNIA SIWATPCREL QITEKICKRA RSLIGSIPNA
DDMLESIANS IPVEGMESLL PALVDRMESV QNMLPKESVI ILSDPEKCRR AADDVTATAN
EFLAASWHVA ASGHGSGAPI TFDQANFLDF DETISSLELS NHDVWKLTSF GVDNQIYGNI
ALPASAPQEF RGDESKVSGG ITSLVDNGFA VTITAAASGT LARLRRAIYA TGVHEFTTVR
SSISDGFIDN VARIAILTER DLTGKSSASA QLKTPKRRRK AIDLMELKPG DFVVHEQHGI
GRFVGMKQRN IAVSGGSATR EYLVIEYAPS KRNAPNDKLF IPTDQLDLVS KYIGAEIPKL
NKLGGSDWAQ TKAKAKKHVH EIAENLIKLY SARQQSRGFA FSKDTPWQKE LEDAFPYQET
ADQLTTIDEV KADMENPIPM DRLICGDVGF GKTEIALRAA FKAVQDSKQV VVLVPTTLLV
QQHYETFTNR FEGFPVKVAA MSRFQTSKEI EETLAGLQDG SIDVVIGTHK LLNPSIKFKD
LGLVIIDEEQ RFGVEHKETL KALRTNVDVL SLSATPIPRT LEMAVTGIRE MSTLATPPED
RLPVLTYVGA YDNSQVAACI KRELLRGGQV FYVHNRVEDI SSVASKIQEL VPDVRVAIAH
GKMGEKQLDA VIRDFWHRDI DVLVCTTIIE TGLDISNANT LIVDHADRFG LSQLHQLRGR
VGRGHERAYA YFLYDPSKPM TQQSHDRLST IAQHTALGSG FDVAMKDLEL RGTGNLLGDE
QSGHIEGVGF DLYVRMVSEA VEKYKEPERV EPVCVTIDLP VEASLPVDYI ASDKLRLEAY
RKLAAAKDNS DLQELHDELL DRFGNPPEEF ESLCDVARLR FKAREIGITQ ISSQGKSVRV
VGIDPKESVM MRLKRIYKGL QYRPLTHMLI VPAPFESSLG SGSMSESDIL KWSKQLLEDL
AW
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