| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0653 |
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| Symbol | |
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| ID | 8709977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 732491 |
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| End bp | 735541 |
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| Gene Length | 3051 bp |
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| Protein Length | 1016 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482759 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373883 |
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| Protein GI | 283783129 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1615] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.523938 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTTA ATCTGAATTT TGCAAAATTT ACTTATACTG CAAAAAAGTG GAGGTGGATT
CTTGCGATAG TAGTGTTAAT TGTCGCGTTT GCTGTAGCTG CAATATTTGC TCTCGCAAGG
TTCATAACTG ATTGCATGTG GTATTCGCAG CTTGGATTTG AAAGTGTTAT TTGGATTCAG
CTTGCAGCAA AAGTGGGCGT TTGGGTGCTT TATGCAATAT TAATGGCTGC TTTTGGATAC
TTGTCTGCAG CTTTGGCAAT AAAAGCGCGT CCAAGCAATG CAGATGGAAC TTATATTCGA
ATTAAAGGCA ATGTTATTGA TTTAAAGCAG GGAATTAGTT CAAAGCTTGC TTTGCATGTT
GCAGGAATTT TTTCATTGAT TGTAGGCGCA GTATTTGGAT TTAAATTCTA CAATCATTGG
GCGCAAATTT TGTTAATGTT TAACGCCCAA CCTTTTGGCA TTAAAGATCC GCAATTTGGA
ATTGACAATG GCTTCTATGT ATTTGTGCTT CCAGGATTAA GGTTATTTAT AAGCGCATTT
GTGCTTTTAT TGGTAATATC TCTTGTTTTC TCTATTATTA CGCACATTCT TATGGGAGCA
ATTCGTTTTA GTATGCCTAT CGATGGTAAA GGCATATTAA GTATTACAAA ACGAGCACGT
AGACAAATTT CTGTATGGTT TATGCTTGTG ATTTTGACAT GGGCACTTCA ACAGATTTTA
GACATGTTCG CTTTAGTAAC TCTTGATGGA TCTCGAATTA CAGGCGGCTC ATACACTGAC
ATGAATGCTG GTGTTCCTGG AAGCATAGCA ATGGCAGTGA TAACAGTGTT AGTTGGTTCT
GTTATTGCAT TTTGGTTTAT GAAATCTCAT GCTTTATCTG TAGAAGCACC AATTTCAGTG
CGTTTTAAAA CAGCAATTAA GGCATGGAAA ACACCAATTA TTGCTTTAGC TTTTATGATT
GTTTGCTCAA TTGTTATATC TTTCGCTTGG CCGGCACTTG TGCAGCGATT TAAAGTTGCT
CCTAATGCTC AGGAATTGGA AGCTACTTAT ATTCAGCGTA ATATCGATGC AACAAAGTTT
GCTTACGGGC TAAATAACGT AAAGAAAGAA TCGTATAACG CTACTTCTAA AGGTAAATCA
GGTGCATTAT CAAAAGAAGC AGAGTCAACT GCGCAAATTC GTTTGTTAGA TCCACAAGTT
ACGTCTCCAA CGTTCCGTCA ATTGCAGCAA TCGAAGCAAT ATTACACTTT CGCAGATACG
CTTTCAGTTG ATAAATACGA TATTGACGGT GTAAGTCAAG ATACGGTTAT TGCTGCGCGC
GAGCTTGATT TAGCTGGCAA CGATAATCGA AACTGGGTTA ATGATCATAC AGTTTATACG
CATGGCTATG GAATTGTTGC AGCTTACGGA AATAAAGTAA CAACAGATGG ACAGCCACAA
TTTATGGAGT ATGGTATTCC TGCTCAAGGC AAACTTACTA AGTCACAAAA GTATGAACCG
CGTATTTACT TCTCACCAAA TGCTCCTGAG TATTCTATCG TTGGTTCTCC AAAAGGGACA
TCTCCATGGG AGTTTGATTA TCCGACTGGC TCTCAAGGTG CTTTAACTAC TTTCAAAGGC
AATGGTGGTC CAAGTTTAGG AAACTTCTTC TCTAAACTTT TGCATGCAAT TAGATTTGAG
TCTGATCAGA TTCTTTTTTC TGACCGTGTG ACTTCTGAAT CTCAAATTTT GTATGATCGT
GATCCTAAGA CACGCGTGTC TAAGGTTGCT CCTTACTTAA CTTTGGATGG TCGAGTTTAT
CCTGCAGTAG TAGATGGTCG CGTTAAGTGG ATTGTTGATG GCTATACTAC TTCTGATTCT
TACCCTTATT CTCAAATGAC TGATTTTGGT AAGGTAACTC AAGATTCCAC AACAACAACT
TCTCATTCTA TTAAAGGGTT GACAAATCAG CGCGCAAACT ACATTCGTAA TTCTGTGAAA
GCTACAGTTG ATGCTTATGA TGGATCTGTT GATTTGTATG TGTGGGATAC GAAAGACCCT
GTGATTAAAG CATGGCGTTC AATTTTCCCA GGTCATTATC ATGACATTTC TAAGATTTCT
GGCGATTTGA TGAAGCATTT GCGTTACCCA GAAAGCTTGT TTAAAGTTCA ACGTCACTTA
TTAGCAAAGT ATCACGTCGA TACAGCAAGC CAATTCTTCT CTGGAGAAGA CTTCTGGCAG
ATTCCTGTTG ATCCAACTGA ATCTCAAAAA GCACAAAAAG AAGATATTTT GCAACCTCCA
TACTATTTGA CTTTGCAAAC TGGAGACGCA AAGAAACCAG TATTTTCGCT TGTTTCTACT
TATATTCCGG CAGGTAAAAG TACTCGTGAA ATATTAACTG GTTTCTTGTC TGTTGATTCA
GATGCGGGGG ATACTCCTGG AAAGATTGGT CCAAATTACG GTAAGATTCG TTTGCAAGAA
TTACCTAAGA TATCTAATGT TCCAGGACCT GGTCAAGCTC AGAATAATTT CAACGCTAAT
GCAAATGTTT CTAAAGAATT GAATTTGCTT GAATCCGGTT CTACTAAAGT TAAGCGCGGC
AATTTGATTA CATTGCCTCT TGGCGGTGGG CTGGTTTATG TAGAGCCTGT TTATGTGCAA
TCTAGCGGTT CTACTAGCTA TCCTTTGCTT AAGAAGGTGT TAGTTGCGTT TGGAGATCAA
GTTGGATTTG CAGATACGTT AGATGAAGCA CTTAATCAAG TATTTGGCGG AAACTCGGGC
GCTTTGGCTG GAGATGCTTC TAATAATTCT TCTTCAAACA ATGCTGCTGA AAATAATGAA
TCTAAGGATG CTGATTCTAA AGAAGGTACT TCTAAGGAAA ATGAGTCTAC GAATTCAGAA
AAATCTCATT CTATGAGCCA AAAAGCTAAA GAAGCACTTA AACGTGCGGC TCAAGCATTA
AAAGATTCTG ATTCTGCTAT GCGATCCGGA AACTGGGAAG CTTACGGAAA GGCACAAAAA
GAGTTGAGCG ATGCTATTAA TGAAGCAATG AAAGAAGAAT CAGGTAAGTA A
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| Protein sequence | MKVNLNFAKF TYTAKKWRWI LAIVVLIVAF AVAAIFALAR FITDCMWYSQ LGFESVIWIQ
LAAKVGVWVL YAILMAAFGY LSAALAIKAR PSNADGTYIR IKGNVIDLKQ GISSKLALHV
AGIFSLIVGA VFGFKFYNHW AQILLMFNAQ PFGIKDPQFG IDNGFYVFVL PGLRLFISAF
VLLLVISLVF SIITHILMGA IRFSMPIDGK GILSITKRAR RQISVWFMLV ILTWALQQIL
DMFALVTLDG SRITGGSYTD MNAGVPGSIA MAVITVLVGS VIAFWFMKSH ALSVEAPISV
RFKTAIKAWK TPIIALAFMI VCSIVISFAW PALVQRFKVA PNAQELEATY IQRNIDATKF
AYGLNNVKKE SYNATSKGKS GALSKEAEST AQIRLLDPQV TSPTFRQLQQ SKQYYTFADT
LSVDKYDIDG VSQDTVIAAR ELDLAGNDNR NWVNDHTVYT HGYGIVAAYG NKVTTDGQPQ
FMEYGIPAQG KLTKSQKYEP RIYFSPNAPE YSIVGSPKGT SPWEFDYPTG SQGALTTFKG
NGGPSLGNFF SKLLHAIRFE SDQILFSDRV TSESQILYDR DPKTRVSKVA PYLTLDGRVY
PAVVDGRVKW IVDGYTTSDS YPYSQMTDFG KVTQDSTTTT SHSIKGLTNQ RANYIRNSVK
ATVDAYDGSV DLYVWDTKDP VIKAWRSIFP GHYHDISKIS GDLMKHLRYP ESLFKVQRHL
LAKYHVDTAS QFFSGEDFWQ IPVDPTESQK AQKEDILQPP YYLTLQTGDA KKPVFSLVST
YIPAGKSTRE ILTGFLSVDS DAGDTPGKIG PNYGKIRLQE LPKISNVPGP GQAQNNFNAN
ANVSKELNLL ESGSTKVKRG NLITLPLGGG LVYVEPVYVQ SSGSTSYPLL KKVLVAFGDQ
VGFADTLDEA LNQVFGGNSG ALAGDASNNS SSNNAAENNE SKDADSKEGT SKENESTNSE
KSHSMSQKAK EALKRAAQAL KDSDSAMRSG NWEAYGKAQK ELSDAINEAM KEESGK
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