Gene HMPREF0424_0615 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0615 
SymbolmenA 
ID8709236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp679889 
End bp680974 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content37% 
IMG OID646482724 
Product1,4-dihydroxy-2-naphthoate octaprenyltransferase 
Protein accessionYP_003373850 
Protein GI283783096 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1575] 1,4-dihydroxy-2-naphthoate octaprenyltransferase 
TIGRFAM ID[TIGR00751] 1,4-dihydroxy-2-naphthoate octaprenyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGTG TAAAAATTTG GCTTAAGGGT GCAAGAATTT ACACGCTTCC AATAGGCTTA 
GTTCCTGTTG TTATGGCGTT TGCGGTTTCA TTTAGAATGA TACGATTTTC GTATTTTGAA 
GAACCAGTTA TGCATCTAGA GCAATGTTTT ATACAATTTT TCTTGTGCTG CATGGTTGCT 
GCGTTTATAC AAATCGCCGT CAATTATGCC AATGATTATT GTGACGGATT GAATGGCTTG 
GATGAGAATC GTAGTTTGCG TGCTTTAAGT AGCAATAATT CAAAACCTTT GTGTGATGTA 
TCTTGGCGCC TTGCAAATGC TGGAATTTCC GCGAAATCTG TGCTTAAAGC CGTAATAATT 
TCTGCTTTTA TTTCTTGTAT TTTTGGTTTG ATTATTGTTT TGCGAACTGG AATATATTGG 
TTTATTTTAC TTGGAATTGC GTGCTTAGCT GCAGCATGGT TTTATGCAGG AGGTAAACAT 
CCTTACGGTT ATAAAGGTTG GGGAGAAGTA AGTGCGTTTG TATTTTTCGG TCCTGTTCCT 
TTTATTGGTT CGTTATGCGC AATTACATAC GGAATTGGTA TTCCAGAAAC TAGCATATTT 
ATCAATAACA GGCAAAGGAT TTTGGCGTGT GTGCTAATAT CTTGCATTCC TGGTGCTTAT 
TCGGCTTGCT TAATGATGGT AAACAATCTT CGAGATATTA AAAGCGATAA AGAGCATGGA 
AAAATAACTG CTATGGTTAG AATTGGTGAG CGCAATGGTA GGCGTTTATG TGCTGCTATG 
AGCATTGTTT CTGCTGTTCT TTTGATTGCA TATTCTATTT TGATTATTGT GTTACCTTCT 
GCAGTGCCGT CAATATGGCG ATTTTATAGT GTTGAAGTTT TCCTCAGTTT TAGTGCGATT 
GTATGCAATG CTTCATGGCA TTTATTTTTT GCTGCTTTTC AGTGGCTTTT ATTGTTAGTC 
ATTGTGATTA AAGCCTATAG GTTTACTAAA TGTGTGCTTA TAGGTGATTA TAAGAATGCT 
TTTCCTATGT GCGTTGCTCA GGCAATACTT GGTGCGCTGG CTGTATTATT ATCTGCGATT 
ATATAA
 
Protein sequence
MKSVKIWLKG ARIYTLPIGL VPVVMAFAVS FRMIRFSYFE EPVMHLEQCF IQFFLCCMVA 
AFIQIAVNYA NDYCDGLNGL DENRSLRALS SNNSKPLCDV SWRLANAGIS AKSVLKAVII 
SAFISCIFGL IIVLRTGIYW FILLGIACLA AAWFYAGGKH PYGYKGWGEV SAFVFFGPVP 
FIGSLCAITY GIGIPETSIF INNRQRILAC VLISCIPGAY SACLMMVNNL RDIKSDKEHG 
KITAMVRIGE RNGRRLCAAM SIVSAVLLIA YSILIIVLPS AVPSIWRFYS VEVFLSFSAI 
VCNASWHLFF AAFQWLLLLV IVIKAYRFTK CVLIGDYKNA FPMCVAQAIL GALAVLLSAI 
I