Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0610 |
Symbol | pulA_1 |
ID | 8709109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 669211 |
End bp | 674877 |
Gene Length | 5667 bp |
Protein Length | 1888 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 646482719 |
Product | pullulanase, type I |
Protein accession | YP_003373845 |
Protein GI | 283783091 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
TIGRFAM ID | [TIGR02104] pullulanase, type I |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGCTA TTGTTGCGTC TGTTGCAATG CTTGTAACTG GTTTTGCTGT TACAATTAGC GCAAACGCTG TGACTAGCGG GGAGTCTAGC AATAGCAAAG AAACTTCTTC GAATGTAACT CTTAAAGGTA AAGGTGTTAT TGTTACTGCA TTCCAGCAGA ATTGGAAGAG TATTGCTCAA GAGTGCACTA AAACTTATGG CCCTGAAGGT GTGAAGTATG TGCAAATTTC GCCTTCTCAG GATCATATTA AAGGTAAAGC TTGGTGGACT TCTTACCAGC CTGTGAGCTA TAAGCTTGAT TCTAAACTTG GCACTGAAGC TGAGTTTAAA GATATGATTA AAACTTGCAA AGCAGCAAAG GTTGGAATTA TTGCAGATGC TGTAATTAAT CACATGGCTG GCGCTGATAA TAAAGATACT GTCGGTGTTG GTGGAAGTAA GTATGATGTG TCTACTCAGA CTTTTGAAGA TGCTGGATAT AAAAAGGATG ATTTCCATCA AGATAATAGG AATATTGAGC ATTATAACAT TGCTGAGGAA GTGTGGAATC GCAGGCTTGT AGGCTTACTT GATTTGGATA CTTCTAAGCC GCATGTTCAG CAAGTTTTAG GTAAGTATTT TGCAGATTTG TTGAAGCTTG GTGTTGCTGG TTTCCGTGTT GATGCTGTAA AGCATATTTC TCCAGAAGAT ATGAGTGGTA TTAAAGCTTC TGCTATAAAG CAATACAACG AAGGTATTGA CGACAGCAAA AAGATTAATG ACATCTGGTG GATGCAGGAA ACTATTGGCA ATCCTTCAGA AGCTCAACAA ATTCAGCCAG CTGCGCATTT GAATGAAGGC GAAGTTAACG AGTTTGGCTA CTCTTACCAG CTTATGCAAA GTTTCAAAGG CTCGCTGATG AAGGCAAGCA AGCCTTTGAA CAAAGTTCAA GACGGAATGG TTAAGAGCGA TAAAGCTGCT ATTTTCGTTA CGAATTGGGA TACAGAGCGC GGTAACAGCG TGCTTACGTA TAAGGACGGT CGTCGTTACG CTTTAGCAAA CGCTTTCATG CTCGCGTGGC CATACGGCAC TCCAAACGTG TATTCCGGAT ACAAGTTCGA TAAGAATGAT GATGGTGCTC CTGGTGCAAC TGAAACGTCT GTTCCGGAAG TAACTTGTGA TGCTAATTCA AAGTGGCAGT GCACTCAGCG TTGGACTTCG ATTCGTGGAA TGATTGGATT CTACAATGCT GTTCAAGGTG CAAAAGTCAC CGATTGGCAG GATGATGGCG ATAACAACAT TGCTTTTAGC CGCGAAAAGA AGGGCTTCTT AGCGATCAAC AATTCTCTTG ACGAAAAAGA AGTTTCTTAT AAGACTGATT TGCCTGATGG TGAGTACTGC AATGTGTATG CTGCAGGAGA CTGCTCTAAG ACTGTTAAAG TTGAAAAAGG TGAAGTTAGA ACCAAGATTG GCGCTCGCGA AGCAGTAGCT TTACATGTTA ATGCCACAAA GGCTAATCCT CCGGCAGGCT CTGCCGCAGA CACATCTGAT CCTCAATATG GTGAAGAAAA GCCTGATGCA GGTATGCCAG AAGATCCTAC AACGACCATT TACTTTAAGC CAGATGAAAA GTTTAACGGT AAAAAAGTAT ATGTTCACTA CGGTATAGGC TCAAGCTGGA CTCAAGCTCC TGGCGATGAG ATGCAAAAGG CTTGCGATAG TTGGTATAAG AAGACAATTA GAACCAATGG CAAAGTTTAT GAAGCAGTGT TTAACGATGG CAAAGGTTAC TGGTATCACG AAGGAGATAA TAATAACTTT AAGATTCCAG CTCACACTGA TTCGTATGTA GCTCAAGATC ACAAGGGTAG CGTTGGAGTA AATCCTTGCC CAGTAGCATA TAATCCAAAG ACTACTGTTC GTATCCACTA CAAGCCAAAA GCTGGTGATA CTCGCGATAT TGGCGTTTAT TTGTGGGGCA AAGACAAGGA TGGTAAAGAT TTACCTGGAG CTTGGCATAA ATTTAATGGC ACTGATAAAT TCGGAAAAGT TTTTGAAACT ACGGTTGATG GTTCTTTTGA AAACAAGTCA CTTTCCTTTA TTACTACTAC AAAAGATTGG AATAAAGACG GTGGCGATCG TGCTATTGAA AACTGCGCAA GTGGTCTTGC TGAAGCTTGG GTAACAGGCG GATCGGATAC TACGCAGTTT GCTGCTCCAG ACAACCTTAA GAAGAAGCCA AAAGAGCTAA AGGTAACAGT TCATTATCGC AGGAATGCTG GCGATTATGA AGGCTGGAAC ATGTGGACTT GGAATGACGG AACCGGTGGT ACTGCTCGTT ACTTCACTTC GCATGACGAT TATGGCAAAG TTGCAACCTT TACTGCTAAG AATGATGCTG GTATTGACAG TGTTGGCTTC AAAGTTAGAA AATCTACGCC AATTAACGCT TGGGATCAAC AAGATCCTAG CAATCGCAGT ATTCCAAACA ATGCGATTAA GCTAGATGCA AATAATCCAA ACAAGGGTAG TGCTGAAGTC TGGTTAATGC AAGATGACAT GACAGTGTAC TTAAACGCTA CTATGCCACA ACTTACAGCT CACGTGATGT CTGCTGATAT TGCTGGCTTA AAGAAGTTAG TTGTAAAAGT GTCTGGTGAC GTGTCTTCTG TAAAAGATTC TGACGTAACA CTTTTGGATA CTAGTGAAAA TCCTAGCAAG AAAGTTGAAA TTGCTTCTGC TAAAGCTAAT GGTTCAGAGA TTACTATCGA AACCAAGAAT GACCTTAATA TTAAGCATAA GTATGAGTTG AGTATTAAAG GATTAGCTAC AGGTATTAAG CTTTCTGCTT CCTCAAAAAC TGGTGCTAGC GTAATTCGTA CCGATGAGTT CGATAAGAAA TACGCGTACA ATGGTGATGA TTTAGGTGCT GTGTATTCTG CTTCTTCAAC TACTTTCAAG CTTTGGGCTC CAACAGCAAC TGAAGTAAAG CTGATTACTT ATAAGTCGAC TGCTGAAAAA GCTGAAAAAG ACAAAGAAAC AGCTATGAAA GCAGAAGATC GTGGCGTATG GTCTGTAAAG CTTGAAGGTG ACAAAGCTAA TACAGCTTAC GCATATGAAG TTCATTTTGC TGATGGCACA GTGAATGTTT CTGCTGATCC TTATGCGAAA GCTGCAGTAG TAAACGGTGA GCGTTCTGTT GTATTAGCAG ATAAAGACGC AGGCAGTGCT GGAAATCGTA TGCCAAAGTT TACGAATCCA AGTGACGCAA CAATTGCAGA AATGGATGTT CGTGACTTTT CGATCAATCC AAACTCTGGT ATTAGCGATG CTCATCGTGG CAAGTATCTT GGCGTAGTAG AAGAAGGCAC TAAGACTAAA GATAAGCAGA ATGTTTCTGG CTTTGATTAT TTGAAGTCGC TTGGTGTCAC TCACGTACAA ATCATGCCAA TGTATGATTT TGGTTCTGTG AATGAAACTG GTGACTTGAG CTATGGAAAG CAAGGCGCTC AAAACTGGGG TTATGATCCG CAAAACTACA ATGTTCCTGA AGGATCTTAC TCTACAAATC CTGCCAATCC AACAACGCGA GTTCAGGAAG CTAAGCAAAT GATTGCTGGC CTTCATAAGG CTGGTTTGCG CGTGATTATG GATGTTGTTT ACAACCATGT TTACAACGCA CAAAATCATT CGTTTAACAA GACAGTTCCT GGATACTACT TCCGCTATAA GGATGGTGCT CTGAATGGTA ATTCTGGATG CGGTAACGAT ACTGCGTCTG AACGTCAAAT GATGCGCAAG TATATTTTGG ATTCTGTGAA GTATTGGGCT ACGCATTACA ACCTCGACGG CTTCCGATTT GATTTGATGG GCTTAATTGA CCTGAAGACT ATGCAAGAAG TGCGTGCTGA GCTTAATAAG ATTGATCCTT CAATTATTGT GCTTGGTGAA GGCTGGGATA TGAATGAACT GCTTCCTAAG AGCGAGTCTA CTATTCAACC AAATGCTTAT AAGATTCCAG GAGTAGCGTT CTTTAACGAT TCATTCCGCG ATTCTGTAAA AGGTTCTGTG TTTGCTGCTA AGGGTACTGG TTTTGTCAAT GGCAATACAG ATAAAGGTGT TAAGGCTTTG CTTGAGCATA ATTTGCTTGG TTGCCAATTT GGCACGAGTA GTACTGTTAA GTGCTGGAAT GGTAATGCTG AAACGCACTT TGCTGATGCA GGTCAAATTG TTCAGTATGT TGAAGCTCAC GATAACTTGT CGTTGTACGA TAAGCTAAAG GTCTCTGCTC CTAACGACAC TGAAGACGTA CGATTGAAGA GAGTAAAGCT TGCAAATTCA ATGATTTTGC TTTCGCGCGG CATGCCGTTT ATTCAGCTTG GTCAGGAATT CTTGCGAACT AAGAATGGTA ACGATAATAG TTACAATGCT GGCGATAAAG ACAATGCTCT TGATTGGAAT CGTGCTGCTG ACAAGTCTGA TTCCGTGAAC TATTTCAAGG GATTGTTGAA GCTACGCAAG AGCATTAAAT CTCTTCGTGA TTTTGATTAT GCAACAATTA ACAAGAACAT GAAGATGATT GATGGCACTC CTGATGGTGT AATTGCTTAC ACACTTAACG ATGCAGATAA GCAATATGTT GTAGTGTTCA ATGCTAATAA TGCTGAAACT CAAGTAAAGA TTCCAGCAGG AAAGTATTCT GCACTTGTTG CTAATGGCAA AGTGAATGAT ACTGCTCAAG ACGCAACTGT TGCTGATGAT GGCACATACA AGATTGCTCC TGTTTCTACA GCAGTATTGC TTAGTAAAGA TAAGGAATCT AAGCCAATTC CTCCGGATGC AAAGCCTGGT GATGAGCCTG GCAAACAGCC TGAGAATCCG TCTGAGCCTG GTGAAAAGCC TGGTGAAAAG CCAAAGCCTG GTGAGGATCC TAGTAAGAAG CCTGAGAAGC CAAAACCTGA TCAGCCTGGC ACAAAGCCAG CTCCAGCTCC AAAACCTGGT GAGCATCAGC AAGTTCCTGC TCCTGCTCCG AAGCCGACTC CGTCTGAGTC CAGTGAACAA TCAAAGCCGT CTAAGCCTTC TGTTCCGTCG GAAAAGCCAG TTCCGTCGGA AAAAACAGAA AAGCCGGCTC CAGCTGATTC TGCTAAACCA GCTCCAGCTA AGCCAGCAGA ATCTGCTCCT GTACCTGTTG CTCCTGAAAC AGTTCAGCAG CTTAATCCAG AATTAAAGGG AACTCTTAGC GTTGGTAACA ATAACGTTGC AACTGCAGGT GTTGTTAACA GTGTGAGAAT TAATGTTGTA AACAAAGAGT TCACCGAGCG TTTGCAGCGT GATGGAGTAG TTTATGCTTA CGCGTATATC TATTCATCTC CACGCTTGCT TAAGGGTGCT GATGGTTCAA AGTTTGTGAC TGTTCGCATG GTTAATGGCA AGCCTCAATT TGATGCTCAG TTCCCAGCTG GATATACCGG AAAGCATACG GTTGTTTTGG TTGACGAAAA AGGTAATCAA GTTGCTTGGA CTGAAATAAC AGTAGTAAAT AATGCTGTTA AGAAGAATGT TCATGCGTTA AGTTCAACAG GCAGTAGTGT AGCGCAAATC GCATTTATTA TTGCAATATT GTTGCCTGTT GCAGGTGCTT TCTTGATTAA AGTAAGGCGT TCTAAGCATC TGTCTTGCAA TTATTAA
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Protein sequence | MVAIVASVAM LVTGFAVTIS ANAVTSGESS NSKETSSNVT LKGKGVIVTA FQQNWKSIAQ ECTKTYGPEG VKYVQISPSQ DHIKGKAWWT SYQPVSYKLD SKLGTEAEFK DMIKTCKAAK VGIIADAVIN HMAGADNKDT VGVGGSKYDV STQTFEDAGY KKDDFHQDNR NIEHYNIAEE VWNRRLVGLL DLDTSKPHVQ QVLGKYFADL LKLGVAGFRV DAVKHISPED MSGIKASAIK QYNEGIDDSK KINDIWWMQE TIGNPSEAQQ IQPAAHLNEG EVNEFGYSYQ LMQSFKGSLM KASKPLNKVQ DGMVKSDKAA IFVTNWDTER GNSVLTYKDG RRYALANAFM LAWPYGTPNV YSGYKFDKND DGAPGATETS VPEVTCDANS KWQCTQRWTS IRGMIGFYNA VQGAKVTDWQ DDGDNNIAFS REKKGFLAIN NSLDEKEVSY KTDLPDGEYC NVYAAGDCSK TVKVEKGEVR TKIGAREAVA LHVNATKANP PAGSAADTSD PQYGEEKPDA GMPEDPTTTI YFKPDEKFNG KKVYVHYGIG SSWTQAPGDE MQKACDSWYK KTIRTNGKVY EAVFNDGKGY WYHEGDNNNF KIPAHTDSYV AQDHKGSVGV NPCPVAYNPK TTVRIHYKPK AGDTRDIGVY LWGKDKDGKD LPGAWHKFNG TDKFGKVFET TVDGSFENKS LSFITTTKDW NKDGGDRAIE NCASGLAEAW VTGGSDTTQF AAPDNLKKKP KELKVTVHYR RNAGDYEGWN MWTWNDGTGG TARYFTSHDD YGKVATFTAK NDAGIDSVGF KVRKSTPINA WDQQDPSNRS IPNNAIKLDA NNPNKGSAEV WLMQDDMTVY LNATMPQLTA HVMSADIAGL KKLVVKVSGD VSSVKDSDVT LLDTSENPSK KVEIASAKAN GSEITIETKN DLNIKHKYEL SIKGLATGIK LSASSKTGAS VIRTDEFDKK YAYNGDDLGA VYSASSTTFK LWAPTATEVK LITYKSTAEK AEKDKETAMK AEDRGVWSVK LEGDKANTAY AYEVHFADGT VNVSADPYAK AAVVNGERSV VLADKDAGSA GNRMPKFTNP SDATIAEMDV RDFSINPNSG ISDAHRGKYL GVVEEGTKTK DKQNVSGFDY LKSLGVTHVQ IMPMYDFGSV NETGDLSYGK QGAQNWGYDP QNYNVPEGSY STNPANPTTR VQEAKQMIAG LHKAGLRVIM DVVYNHVYNA QNHSFNKTVP GYYFRYKDGA LNGNSGCGND TASERQMMRK YILDSVKYWA THYNLDGFRF DLMGLIDLKT MQEVRAELNK IDPSIIVLGE GWDMNELLPK SESTIQPNAY KIPGVAFFND SFRDSVKGSV FAAKGTGFVN GNTDKGVKAL LEHNLLGCQF GTSSTVKCWN GNAETHFADA GQIVQYVEAH DNLSLYDKLK VSAPNDTEDV RLKRVKLANS MILLSRGMPF IQLGQEFLRT KNGNDNSYNA GDKDNALDWN RAADKSDSVN YFKGLLKLRK SIKSLRDFDY ATINKNMKMI DGTPDGVIAY TLNDADKQYV VVFNANNAET QVKIPAGKYS ALVANGKVND TAQDATVADD GTYKIAPVST AVLLSKDKES KPIPPDAKPG DEPGKQPENP SEPGEKPGEK PKPGEDPSKK PEKPKPDQPG TKPAPAPKPG EHQQVPAPAP KPTPSESSEQ SKPSKPSVPS EKPVPSEKTE KPAPADSAKP APAKPAESAP VPVAPETVQQ LNPELKGTLS VGNNNVATAG VVNSVRINVV NKEFTERLQR DGVVYAYAYI YSSPRLLKGA DGSKFVTVRM VNGKPQFDAQ FPAGYTGKHT VVLVDEKGNQ VAWTEITVVN NAVKKNVHAL SSTGSSVAQI AFIIAILLPV AGAFLIKVRR SKHLSCNY
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