Gene HMPREF0424_0610 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0610 
SymbolpulA_1 
ID8709109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp669211 
End bp674877 
Gene Length5667 bp 
Protein Length1888 aa 
Translation table11 
GC content42% 
IMG OID646482719 
Productpullulanase, type I 
Protein accessionYP_003373845 
Protein GI283783091 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases 
TIGRFAM ID[TIGR02104] pullulanase, type I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGCTA TTGTTGCGTC TGTTGCAATG CTTGTAACTG GTTTTGCTGT TACAATTAGC 
GCAAACGCTG TGACTAGCGG GGAGTCTAGC AATAGCAAAG AAACTTCTTC GAATGTAACT
CTTAAAGGTA AAGGTGTTAT TGTTACTGCA TTCCAGCAGA ATTGGAAGAG TATTGCTCAA
GAGTGCACTA AAACTTATGG CCCTGAAGGT GTGAAGTATG TGCAAATTTC GCCTTCTCAG
GATCATATTA AAGGTAAAGC TTGGTGGACT TCTTACCAGC CTGTGAGCTA TAAGCTTGAT
TCTAAACTTG GCACTGAAGC TGAGTTTAAA GATATGATTA AAACTTGCAA AGCAGCAAAG
GTTGGAATTA TTGCAGATGC TGTAATTAAT CACATGGCTG GCGCTGATAA TAAAGATACT
GTCGGTGTTG GTGGAAGTAA GTATGATGTG TCTACTCAGA CTTTTGAAGA TGCTGGATAT
AAAAAGGATG ATTTCCATCA AGATAATAGG AATATTGAGC ATTATAACAT TGCTGAGGAA
GTGTGGAATC GCAGGCTTGT AGGCTTACTT GATTTGGATA CTTCTAAGCC GCATGTTCAG
CAAGTTTTAG GTAAGTATTT TGCAGATTTG TTGAAGCTTG GTGTTGCTGG TTTCCGTGTT
GATGCTGTAA AGCATATTTC TCCAGAAGAT ATGAGTGGTA TTAAAGCTTC TGCTATAAAG
CAATACAACG AAGGTATTGA CGACAGCAAA AAGATTAATG ACATCTGGTG GATGCAGGAA
ACTATTGGCA ATCCTTCAGA AGCTCAACAA ATTCAGCCAG CTGCGCATTT GAATGAAGGC
GAAGTTAACG AGTTTGGCTA CTCTTACCAG CTTATGCAAA GTTTCAAAGG CTCGCTGATG
AAGGCAAGCA AGCCTTTGAA CAAAGTTCAA GACGGAATGG TTAAGAGCGA TAAAGCTGCT
ATTTTCGTTA CGAATTGGGA TACAGAGCGC GGTAACAGCG TGCTTACGTA TAAGGACGGT
CGTCGTTACG CTTTAGCAAA CGCTTTCATG CTCGCGTGGC CATACGGCAC TCCAAACGTG
TATTCCGGAT ACAAGTTCGA TAAGAATGAT GATGGTGCTC CTGGTGCAAC TGAAACGTCT
GTTCCGGAAG TAACTTGTGA TGCTAATTCA AAGTGGCAGT GCACTCAGCG TTGGACTTCG
ATTCGTGGAA TGATTGGATT CTACAATGCT GTTCAAGGTG CAAAAGTCAC CGATTGGCAG
GATGATGGCG ATAACAACAT TGCTTTTAGC CGCGAAAAGA AGGGCTTCTT AGCGATCAAC
AATTCTCTTG ACGAAAAAGA AGTTTCTTAT AAGACTGATT TGCCTGATGG TGAGTACTGC
AATGTGTATG CTGCAGGAGA CTGCTCTAAG ACTGTTAAAG TTGAAAAAGG TGAAGTTAGA
ACCAAGATTG GCGCTCGCGA AGCAGTAGCT TTACATGTTA ATGCCACAAA GGCTAATCCT
CCGGCAGGCT CTGCCGCAGA CACATCTGAT CCTCAATATG GTGAAGAAAA GCCTGATGCA
GGTATGCCAG AAGATCCTAC AACGACCATT TACTTTAAGC CAGATGAAAA GTTTAACGGT
AAAAAAGTAT ATGTTCACTA CGGTATAGGC TCAAGCTGGA CTCAAGCTCC TGGCGATGAG
ATGCAAAAGG CTTGCGATAG TTGGTATAAG AAGACAATTA GAACCAATGG CAAAGTTTAT
GAAGCAGTGT TTAACGATGG CAAAGGTTAC TGGTATCACG AAGGAGATAA TAATAACTTT
AAGATTCCAG CTCACACTGA TTCGTATGTA GCTCAAGATC ACAAGGGTAG CGTTGGAGTA
AATCCTTGCC CAGTAGCATA TAATCCAAAG ACTACTGTTC GTATCCACTA CAAGCCAAAA
GCTGGTGATA CTCGCGATAT TGGCGTTTAT TTGTGGGGCA AAGACAAGGA TGGTAAAGAT
TTACCTGGAG CTTGGCATAA ATTTAATGGC ACTGATAAAT TCGGAAAAGT TTTTGAAACT
ACGGTTGATG GTTCTTTTGA AAACAAGTCA CTTTCCTTTA TTACTACTAC AAAAGATTGG
AATAAAGACG GTGGCGATCG TGCTATTGAA AACTGCGCAA GTGGTCTTGC TGAAGCTTGG
GTAACAGGCG GATCGGATAC TACGCAGTTT GCTGCTCCAG ACAACCTTAA GAAGAAGCCA
AAAGAGCTAA AGGTAACAGT TCATTATCGC AGGAATGCTG GCGATTATGA AGGCTGGAAC
ATGTGGACTT GGAATGACGG AACCGGTGGT ACTGCTCGTT ACTTCACTTC GCATGACGAT
TATGGCAAAG TTGCAACCTT TACTGCTAAG AATGATGCTG GTATTGACAG TGTTGGCTTC
AAAGTTAGAA AATCTACGCC AATTAACGCT TGGGATCAAC AAGATCCTAG CAATCGCAGT
ATTCCAAACA ATGCGATTAA GCTAGATGCA AATAATCCAA ACAAGGGTAG TGCTGAAGTC
TGGTTAATGC AAGATGACAT GACAGTGTAC TTAAACGCTA CTATGCCACA ACTTACAGCT
CACGTGATGT CTGCTGATAT TGCTGGCTTA AAGAAGTTAG TTGTAAAAGT GTCTGGTGAC
GTGTCTTCTG TAAAAGATTC TGACGTAACA CTTTTGGATA CTAGTGAAAA TCCTAGCAAG
AAAGTTGAAA TTGCTTCTGC TAAAGCTAAT GGTTCAGAGA TTACTATCGA AACCAAGAAT
GACCTTAATA TTAAGCATAA GTATGAGTTG AGTATTAAAG GATTAGCTAC AGGTATTAAG
CTTTCTGCTT CCTCAAAAAC TGGTGCTAGC GTAATTCGTA CCGATGAGTT CGATAAGAAA
TACGCGTACA ATGGTGATGA TTTAGGTGCT GTGTATTCTG CTTCTTCAAC TACTTTCAAG
CTTTGGGCTC CAACAGCAAC TGAAGTAAAG CTGATTACTT ATAAGTCGAC TGCTGAAAAA
GCTGAAAAAG ACAAAGAAAC AGCTATGAAA GCAGAAGATC GTGGCGTATG GTCTGTAAAG
CTTGAAGGTG ACAAAGCTAA TACAGCTTAC GCATATGAAG TTCATTTTGC TGATGGCACA
GTGAATGTTT CTGCTGATCC TTATGCGAAA GCTGCAGTAG TAAACGGTGA GCGTTCTGTT
GTATTAGCAG ATAAAGACGC AGGCAGTGCT GGAAATCGTA TGCCAAAGTT TACGAATCCA
AGTGACGCAA CAATTGCAGA AATGGATGTT CGTGACTTTT CGATCAATCC AAACTCTGGT
ATTAGCGATG CTCATCGTGG CAAGTATCTT GGCGTAGTAG AAGAAGGCAC TAAGACTAAA
GATAAGCAGA ATGTTTCTGG CTTTGATTAT TTGAAGTCGC TTGGTGTCAC TCACGTACAA
ATCATGCCAA TGTATGATTT TGGTTCTGTG AATGAAACTG GTGACTTGAG CTATGGAAAG
CAAGGCGCTC AAAACTGGGG TTATGATCCG CAAAACTACA ATGTTCCTGA AGGATCTTAC
TCTACAAATC CTGCCAATCC AACAACGCGA GTTCAGGAAG CTAAGCAAAT GATTGCTGGC
CTTCATAAGG CTGGTTTGCG CGTGATTATG GATGTTGTTT ACAACCATGT TTACAACGCA
CAAAATCATT CGTTTAACAA GACAGTTCCT GGATACTACT TCCGCTATAA GGATGGTGCT
CTGAATGGTA ATTCTGGATG CGGTAACGAT ACTGCGTCTG AACGTCAAAT GATGCGCAAG
TATATTTTGG ATTCTGTGAA GTATTGGGCT ACGCATTACA ACCTCGACGG CTTCCGATTT
GATTTGATGG GCTTAATTGA CCTGAAGACT ATGCAAGAAG TGCGTGCTGA GCTTAATAAG
ATTGATCCTT CAATTATTGT GCTTGGTGAA GGCTGGGATA TGAATGAACT GCTTCCTAAG
AGCGAGTCTA CTATTCAACC AAATGCTTAT AAGATTCCAG GAGTAGCGTT CTTTAACGAT
TCATTCCGCG ATTCTGTAAA AGGTTCTGTG TTTGCTGCTA AGGGTACTGG TTTTGTCAAT
GGCAATACAG ATAAAGGTGT TAAGGCTTTG CTTGAGCATA ATTTGCTTGG TTGCCAATTT
GGCACGAGTA GTACTGTTAA GTGCTGGAAT GGTAATGCTG AAACGCACTT TGCTGATGCA
GGTCAAATTG TTCAGTATGT TGAAGCTCAC GATAACTTGT CGTTGTACGA TAAGCTAAAG
GTCTCTGCTC CTAACGACAC TGAAGACGTA CGATTGAAGA GAGTAAAGCT TGCAAATTCA
ATGATTTTGC TTTCGCGCGG CATGCCGTTT ATTCAGCTTG GTCAGGAATT CTTGCGAACT
AAGAATGGTA ACGATAATAG TTACAATGCT GGCGATAAAG ACAATGCTCT TGATTGGAAT
CGTGCTGCTG ACAAGTCTGA TTCCGTGAAC TATTTCAAGG GATTGTTGAA GCTACGCAAG
AGCATTAAAT CTCTTCGTGA TTTTGATTAT GCAACAATTA ACAAGAACAT GAAGATGATT
GATGGCACTC CTGATGGTGT AATTGCTTAC ACACTTAACG ATGCAGATAA GCAATATGTT
GTAGTGTTCA ATGCTAATAA TGCTGAAACT CAAGTAAAGA TTCCAGCAGG AAAGTATTCT
GCACTTGTTG CTAATGGCAA AGTGAATGAT ACTGCTCAAG ACGCAACTGT TGCTGATGAT
GGCACATACA AGATTGCTCC TGTTTCTACA GCAGTATTGC TTAGTAAAGA TAAGGAATCT
AAGCCAATTC CTCCGGATGC AAAGCCTGGT GATGAGCCTG GCAAACAGCC TGAGAATCCG
TCTGAGCCTG GTGAAAAGCC TGGTGAAAAG CCAAAGCCTG GTGAGGATCC TAGTAAGAAG
CCTGAGAAGC CAAAACCTGA TCAGCCTGGC ACAAAGCCAG CTCCAGCTCC AAAACCTGGT
GAGCATCAGC AAGTTCCTGC TCCTGCTCCG AAGCCGACTC CGTCTGAGTC CAGTGAACAA
TCAAAGCCGT CTAAGCCTTC TGTTCCGTCG GAAAAGCCAG TTCCGTCGGA AAAAACAGAA
AAGCCGGCTC CAGCTGATTC TGCTAAACCA GCTCCAGCTA AGCCAGCAGA ATCTGCTCCT
GTACCTGTTG CTCCTGAAAC AGTTCAGCAG CTTAATCCAG AATTAAAGGG AACTCTTAGC
GTTGGTAACA ATAACGTTGC AACTGCAGGT GTTGTTAACA GTGTGAGAAT TAATGTTGTA
AACAAAGAGT TCACCGAGCG TTTGCAGCGT GATGGAGTAG TTTATGCTTA CGCGTATATC
TATTCATCTC CACGCTTGCT TAAGGGTGCT GATGGTTCAA AGTTTGTGAC TGTTCGCATG
GTTAATGGCA AGCCTCAATT TGATGCTCAG TTCCCAGCTG GATATACCGG AAAGCATACG
GTTGTTTTGG TTGACGAAAA AGGTAATCAA GTTGCTTGGA CTGAAATAAC AGTAGTAAAT
AATGCTGTTA AGAAGAATGT TCATGCGTTA AGTTCAACAG GCAGTAGTGT AGCGCAAATC
GCATTTATTA TTGCAATATT GTTGCCTGTT GCAGGTGCTT TCTTGATTAA AGTAAGGCGT
TCTAAGCATC TGTCTTGCAA TTATTAA
 
Protein sequence
MVAIVASVAM LVTGFAVTIS ANAVTSGESS NSKETSSNVT LKGKGVIVTA FQQNWKSIAQ 
ECTKTYGPEG VKYVQISPSQ DHIKGKAWWT SYQPVSYKLD SKLGTEAEFK DMIKTCKAAK
VGIIADAVIN HMAGADNKDT VGVGGSKYDV STQTFEDAGY KKDDFHQDNR NIEHYNIAEE
VWNRRLVGLL DLDTSKPHVQ QVLGKYFADL LKLGVAGFRV DAVKHISPED MSGIKASAIK
QYNEGIDDSK KINDIWWMQE TIGNPSEAQQ IQPAAHLNEG EVNEFGYSYQ LMQSFKGSLM
KASKPLNKVQ DGMVKSDKAA IFVTNWDTER GNSVLTYKDG RRYALANAFM LAWPYGTPNV
YSGYKFDKND DGAPGATETS VPEVTCDANS KWQCTQRWTS IRGMIGFYNA VQGAKVTDWQ
DDGDNNIAFS REKKGFLAIN NSLDEKEVSY KTDLPDGEYC NVYAAGDCSK TVKVEKGEVR
TKIGAREAVA LHVNATKANP PAGSAADTSD PQYGEEKPDA GMPEDPTTTI YFKPDEKFNG
KKVYVHYGIG SSWTQAPGDE MQKACDSWYK KTIRTNGKVY EAVFNDGKGY WYHEGDNNNF
KIPAHTDSYV AQDHKGSVGV NPCPVAYNPK TTVRIHYKPK AGDTRDIGVY LWGKDKDGKD
LPGAWHKFNG TDKFGKVFET TVDGSFENKS LSFITTTKDW NKDGGDRAIE NCASGLAEAW
VTGGSDTTQF AAPDNLKKKP KELKVTVHYR RNAGDYEGWN MWTWNDGTGG TARYFTSHDD
YGKVATFTAK NDAGIDSVGF KVRKSTPINA WDQQDPSNRS IPNNAIKLDA NNPNKGSAEV
WLMQDDMTVY LNATMPQLTA HVMSADIAGL KKLVVKVSGD VSSVKDSDVT LLDTSENPSK
KVEIASAKAN GSEITIETKN DLNIKHKYEL SIKGLATGIK LSASSKTGAS VIRTDEFDKK
YAYNGDDLGA VYSASSTTFK LWAPTATEVK LITYKSTAEK AEKDKETAMK AEDRGVWSVK
LEGDKANTAY AYEVHFADGT VNVSADPYAK AAVVNGERSV VLADKDAGSA GNRMPKFTNP
SDATIAEMDV RDFSINPNSG ISDAHRGKYL GVVEEGTKTK DKQNVSGFDY LKSLGVTHVQ
IMPMYDFGSV NETGDLSYGK QGAQNWGYDP QNYNVPEGSY STNPANPTTR VQEAKQMIAG
LHKAGLRVIM DVVYNHVYNA QNHSFNKTVP GYYFRYKDGA LNGNSGCGND TASERQMMRK
YILDSVKYWA THYNLDGFRF DLMGLIDLKT MQEVRAELNK IDPSIIVLGE GWDMNELLPK
SESTIQPNAY KIPGVAFFND SFRDSVKGSV FAAKGTGFVN GNTDKGVKAL LEHNLLGCQF
GTSSTVKCWN GNAETHFADA GQIVQYVEAH DNLSLYDKLK VSAPNDTEDV RLKRVKLANS
MILLSRGMPF IQLGQEFLRT KNGNDNSYNA GDKDNALDWN RAADKSDSVN YFKGLLKLRK
SIKSLRDFDY ATINKNMKMI DGTPDGVIAY TLNDADKQYV VVFNANNAET QVKIPAGKYS
ALVANGKVND TAQDATVADD GTYKIAPVST AVLLSKDKES KPIPPDAKPG DEPGKQPENP
SEPGEKPGEK PKPGEDPSKK PEKPKPDQPG TKPAPAPKPG EHQQVPAPAP KPTPSESSEQ
SKPSKPSVPS EKPVPSEKTE KPAPADSAKP APAKPAESAP VPVAPETVQQ LNPELKGTLS
VGNNNVATAG VVNSVRINVV NKEFTERLQR DGVVYAYAYI YSSPRLLKGA DGSKFVTVRM
VNGKPQFDAQ FPAGYTGKHT VVLVDEKGNQ VAWTEITVVN NAVKKNVHAL SSTGSSVAQI
AFIIAILLPV AGAFLIKVRR SKHLSCNY