| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0576 |
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| Symbol | |
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| ID | 8708753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 621074 |
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| End bp | 623350 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482685 |
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| Product | DNA or RNA helicase, Superfamily I family protein |
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| Protein accession | YP_003373812 |
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| Protein GI | 283783058 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3973] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0841204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACCT ATTCCTCACA ACTTAGCGAA GAACAACAAG CTGTTGACCG AGCTTATAGC
CGTCTAGATG ATTTGCGTAA TACTATTCGC GCGCGCTTAG ACGCTGTGCG CGCGTCAGGT
TCGCACGGTT CACCAACACA GCGCACAGAG CGCGACTCAT TCGCAACCAT GTACGAAGAT
CGTCTTACAC AATTACGAGC TGTTGAAGAT CGTCTTGTTT TTGGAAGACT TGATAACACA
GAAGGCATTA GGCGATACAT TGGTCGCATT GGTTTGCTTA GCGAAAACCA TGATCCTATT
CTTACAGATT GGCGCGCTGA AGCTGCACGA CCTTTTTATG AGGCAACCCC TTCGCATCAT
GGCGATATTG TTATGCGTCG TCATATTACA CTCCGTTTCA GAGACGTTAT TGGTGTTGAA
GATGAAGTAC TTGACATACA TTCTGATGAA ATAGGAAAAG CTTCACAACA AGGTACTCTT
ACTGGTGAAG GAGCACTGCT CGCATCTTTA GGTTCTCGCA GAACCGGCAA AATGACTGAT
ATTGTTGCCA CTATTCAAGC AGAACAAGAT CGAATTATTC GCGCTCCTCT TGATCACACT
ATTGTTGTAC AGGGAGGTCC TGGCACAGGA AAAACAGCTG TTGCTTTGCA CAGAGCAGCC
TATTTGTTAT ACACTCACAG GCGCAAACTT GAGCGTTCAG GAGTTCTTAT TGTTGGTCCA
AGTTCGGCAT TCTTGCGTTA TATTGATCAA GTACTCCCTT CTCTTGGTGA AACAGGTGTA
GTAAGTAGAA CTATTCCCGA CTTAATTCCT GGAATTTGTG CTACAGATGA AGATTCTCCA
TACGCAGCAA AATTAAAAGG AATGTATCGT ATGCGAACAG TTATTGCGAA TGCAATTGCC
GCTCGTATTC GCGTTCCTAA AAATCTTCCA ACAATTCATG TTGGAGGATT TAGTATTCCT
CTTCTAAAAG AAGATATTGA GATAGCTCAA TCAGATGCTC AACGGACTCA CCAGCCGCAT
AACCAGGCAC GAAATACTTT TATAAAAACC GTGCTCAGCA TATTGAAAAA TCGTTATTTG
GAAAAACTTG ATTATGTTCC AGATCAAGCT GAATTAAACG ATATAACTTC TCAACTTCGT
CTTGACGATA AACTGCGCAT TACTTTAAAT CTTGCATGGT TACCTATGAC TGGAGAATGG
CTCATTGACC AACTTTTTGC TAAACCTGAC AAATTACGCA CATACGCACC TTGGTTAAGC
GACGAAGACA TTAACTCACT TACTAGACCA AAGGGCAGCC CGCTTACTCG TTCTGATATT
CCATTACTTG ATGAAGCTAT GGAATTGCTC GGTCCTGATC CAAAACTTGA CGCTCAAAGA
TCTGCAGCAC AAGCAAAAAA ACTTGAAGAA CAACAATTTG CAGCTGACAC TTTAGCACAA
GCTGGTATTG GAAATGGCAT AGTAACTGCC GATATGCTTC TTGATAATCT GCAAGGCGAC
GATGCAGGAA TGCTTGCCCG TAAAGCAGCT TCTGACCGCG AGTGGACATA TGGTCACGTA
GTTGTCGATG AAGCTCAAGA GCTTACAGCA ATGGATTGGA GAATGCTTAT TCGTCGTTGT
CCTTCACGCT CCTTTACTAT TGTTGGCGAT GTTGCACAAA CTTCTGCGCT CGGAGGAACT
CACAGATGGC AGAAGAATAT GAATTCTCTA TTTGGAGAAC CAAATTGGGA TCTTTACGAG
TTAACAATTA ATTATCGAAA TCCTAGTGAA GTTTCTGAAG CAGCAAGCAA AGTTGCAACA
GATTCAGGAT TATACATTTC TACTGTTCAT GCAGTTCGCT CAGTACCTGA TTCACTCGTA
TCACAAACGG TTGAATCACA AGATGAACTC GATACTGCAC TTGCAGAATC TTGTACAAAA
CTATTCGAAA AATTTGTCTC TGATGATGGT AGTGGTCGTA TTGCAATCAT TACTCCTAAC
AGTATGGTTA GCCATGCTAA AAAGGTTGTA AATCAAGCAT TAGAACATGC ATTACCTGAA
AAATTATGGA ATCAGTTAAA CAAACAAAAT GCCGATGATT GCCAATGCAG CGTTTGCACA
GCTGAGGAAG TAAAAGGTCT TGAATATGAC GCTGTCATAG TGTTGCAACC TTCTCAGATT
GAGCAGGAAG CAGCATCTAG ACTAACTGCT GCAGCCAATC TATATGTTGC AATGACTAGA
CCAACTCAAA AATTGCATAT AATACGCACT GCAGATGACG CAAATTTTGA GAAATAG
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| Protein sequence | MSTYSSQLSE EQQAVDRAYS RLDDLRNTIR ARLDAVRASG SHGSPTQRTE RDSFATMYED
RLTQLRAVED RLVFGRLDNT EGIRRYIGRI GLLSENHDPI LTDWRAEAAR PFYEATPSHH
GDIVMRRHIT LRFRDVIGVE DEVLDIHSDE IGKASQQGTL TGEGALLASL GSRRTGKMTD
IVATIQAEQD RIIRAPLDHT IVVQGGPGTG KTAVALHRAA YLLYTHRRKL ERSGVLIVGP
SSAFLRYIDQ VLPSLGETGV VSRTIPDLIP GICATDEDSP YAAKLKGMYR MRTVIANAIA
ARIRVPKNLP TIHVGGFSIP LLKEDIEIAQ SDAQRTHQPH NQARNTFIKT VLSILKNRYL
EKLDYVPDQA ELNDITSQLR LDDKLRITLN LAWLPMTGEW LIDQLFAKPD KLRTYAPWLS
DEDINSLTRP KGSPLTRSDI PLLDEAMELL GPDPKLDAQR SAAQAKKLEE QQFAADTLAQ
AGIGNGIVTA DMLLDNLQGD DAGMLARKAA SDREWTYGHV VVDEAQELTA MDWRMLIRRC
PSRSFTIVGD VAQTSALGGT HRWQKNMNSL FGEPNWDLYE LTINYRNPSE VSEAASKVAT
DSGLYISTVH AVRSVPDSLV SQTVESQDEL DTALAESCTK LFEKFVSDDG SGRIAIITPN
SMVSHAKKVV NQALEHALPE KLWNQLNKQN ADDCQCSVCT AEEVKGLEYD AVIVLQPSQI
EQEAASRLTA AANLYVAMTR PTQKLHIIRT ADDANFEK
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