| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0571 |
|---|
| Symbol | |
|---|
| ID | 8709505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 618448 |
|---|
| End bp | 618927 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646482680 |
|---|
| Product | prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein |
|---|
| Protein accession | YP_003373807 |
|---|
| Protein GI | 283783053 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0782] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01462] transcription elongation factor GreA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0436205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAG AAAAAACTAT TTTACTTACG CAGGAAGCGT ATGACAAACT AAAAGAAGAG
TTAGCACATC GTGAAGGTGA GTATCGAGAA GAAATCACTG AGCGTATTGC TGCAGCTCGT
GCTGAAGGTG ATTTGTCTGA AAATGGTGGT TATCAGGCTG CTCGTGAAGA GCAAGGAAAG
AATGAAGGTC GCATTAATGA GCTTATTGTA AAGCTTCGTA ATGCGAAGAT TCTTGAAGCA
CCGAAGGATG GCACTGTTGG CAATGGTTCT TTGGTTACTC TTGAGCTTGC AGGTCGAGAA
ATGACTTATG TTCTTGGTTC TCGCGATATT GCTGTAGCTA CGGATTATGA CGTTATTAGC
CCGGAATCTC CAATTGGGGC AGCTATTATG GGTGCTCATG CTGGTGATAC TGTTAGCTAT
GCAGCTCCAA ATGGACGTGA AATTTCAGTG ACAATTAAGG ATTCGCATCC ACTTGCGTAA
|
|---|
| Protein sequence | MAEEKTILLT QEAYDKLKEE LAHREGEYRE EITERIAAAR AEGDLSENGG YQAAREEQGK
NEGRINELIV KLRNAKILEA PKDGTVGNGS LVTLELAGRE MTYVLGSRDI AVATDYDVIS
PESPIGAAIM GAHAGDTVSY AAPNGREISV TIKDSHPLA
|
|---|
| |