| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0558 |
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| Symbol | |
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| ID | 8709680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 602024 |
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| End bp | 603364 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482668 |
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| Product | Na+/H+ antiporter family protein |
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| Protein accession | YP_003373795 |
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| Protein GI | 283783041 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2056] Predicted permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000048202 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTAAGTT TGCAAATTTT AAATATTATA TTTAATCCGG TTATTGTGTC GGTTGTAGTG
CTATGCGCAC TTAGTCTTGC AAAACTTAAT GTTTTGCTAT CAATGATAGT AGCTTGCATT
GCAGGTGGCA TTGCCGGTCA TCTTCCTCTT TTTGGTGACG GAAATCACAC AATTATGGCT
TTGCTTTGCG ACGGTTTCTC CACCAACTCA CAAACTGCGC TCGCCTACAT TTTGCTTGGA
ACTTTTGCGG AAGCAATTAC TGCAACAGGC TTAGCTCAAA TTATTTCTAA AAAAATTAGC
AAAATTATTG GCATGAAAAA GTACGCTCTA CTTGCAGTAC TAACTCTAAT TGCGTGCATG
TCTCAAAATA TTGTGCCGGT TCATATTGCT TATATTCCTA TTCTTATTCC GCCTATTTTG
AGAGTTATGA ATAAGATGAA GCTTGACCGC CGAGCTGCAG CATGCTGCAC TGCTTTCGGT
CTTGAAGTTC CGTATATTGC TATTCCATTT GGCTTTGGTC TTATTTTCCA AACTGTTATT
GCTACGAATC TTTCTAAAAA TGGCATGAAG GTTAGTGTTG CAGACGTTAG TGCTGTGAAC
TGGTATTTAG GTCTTGCAAT GTTTGCATCA CTACTTTTTG CTGTATTTGT GCTTTACAGA
AAACCTCGCG AATACAAAAC TACAGAAACT GACACTCGCG CAGCCGACGC CGTTGTCGGA
CCTCTTAAGA AACGCCACTA CGTAACCATT CTCGCAATTA TTGTTGTTGT AGTAGTGCAA
ATTATTAGTA AAGATCTTTC ACTTTCTTCT CTTGCAGGTC TTGCAACCAT GATTATTTTT
GGAGCAATAA AGTGGAACGA CATCGACAAG CAGCTTACTG GCGGCGTAAA ACTCATGGGT
CTTATTGCAT TTGTGATGCT CATTGCGGGC GGATATGCTA ACGTGATCCA AGCGACAGGA
GGAGTTGAGG AGCTTGTAAA CTTTGGCGTA GCTTCTATGG GACAGAACAA ACTTGTTGCC
GCATTTGTTA TTACGCTTAT TGGTTTGCTT GTGACTATGG GCATTGGCAC TTCGTTTGGC
ACGGTTCCTA TTCTTGCGGT TTTGTTCGTA CCTCTTTGCC AGAGCATTGG TTTTAGCACT
CCTGCAACGA TTCTTCTTAT GTCTTCCGCT GCAGCTCTTG GAGACGCAGG CTCCCCTGCT
TCCGACACCA CGCTCGGGCC TACTGCCGGC TTAAATGCGG ACGGACAGCA CAGTCACATT
TGGGATACTT GCGTTCCAAC ATTCCTTATT TTCAACATTC CGCTTATGGT TGCAGGCATT
GTAATATCGC AGTTTATTTA G
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| Protein sequence | MLSLQILNII FNPVIVSVVV LCALSLAKLN VLLSMIVACI AGGIAGHLPL FGDGNHTIMA
LLCDGFSTNS QTALAYILLG TFAEAITATG LAQIISKKIS KIIGMKKYAL LAVLTLIACM
SQNIVPVHIA YIPILIPPIL RVMNKMKLDR RAAACCTAFG LEVPYIAIPF GFGLIFQTVI
ATNLSKNGMK VSVADVSAVN WYLGLAMFAS LLFAVFVLYR KPREYKTTET DTRAADAVVG
PLKKRHYVTI LAIIVVVVVQ IISKDLSLSS LAGLATMIIF GAIKWNDIDK QLTGGVKLMG
LIAFVMLIAG GYANVIQATG GVEELVNFGV ASMGQNKLVA AFVITLIGLL VTMGIGTSFG
TVPILAVLFV PLCQSIGFST PATILLMSSA AALGDAGSPA SDTTLGPTAG LNADGQHSHI
WDTCVPTFLI FNIPLMVAGI VISQFI
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