Gene HMPREF0424_0480 details

Gene Information

• Locus tag: HMPREF0424_0480
• Symbol: typA
• ID: 8710019
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 523933
• End bp: 525858
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 646482594
• Product: GTP-binding protein TypA
• Protein accession: YP_003373721
• Protein GI: 283782967
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACTGTTC GCGGTGATAT TCGAAATGTG GCAATTGTGG CGCACGTAGA CCACGGTAAG 
ACCACTCTGG TAAACGCCAT GCTTCAGCAG TCGCACGTAT TTTCTGAGCG TGAAGAAGTT 
CCAGATCGCG TTATGGATTC CAATGATTTG GAACGCGAAA AGGGCATTAC TATTCTTGCT 
AAGAACACTG CTGTGCAGTA CACAGGTCCA TTAGCTGAAA AGTATGGTCA TCCAGAAGGT 
ATCACTATTA ACGTTATTGA TACTCCAGGT CACGCTGATT TCGGTGGTGA GGTCGAGCGT 
GGTATCTCTA TGGTTGACGG CGTTGTTTTG TTGGTTGACG CTTCTGAAGG TCCTCTTCCA 
CAGACTCGCT TTGTGCTTCG TAAAGCTTTG GAAGCTAAGC TTCCTGTTAT TTTGTGCGTA 
AATAAGGTAG ATCGTCCAGA TGCTCGTATT GAAGAAGTTG TTGGCGAATC TACAGATTTG 
CTTCTTGGCT TGGCTCAGGA TGTTGTCGAG GAAGGTATTG ACCTCGATCT CGACGCTTTG 
CTTGATTTGC CAGTAATTTA TTGCGCTGCT AAAGCTGGTT ATGCTTCTGT TAATCAGCCT 
GAAAATGGTG GTTTGCCAGA TAACGATAAT TTGGAGCCAT TGTTTGATTC TATTATTTCG 
AACATTCCAG CTCCTGAATA CGAAGAAGGT GCTCCTCTTC AAGCTCATGT TGCAAACATT 
GATTCCTCTG ACTTCTTGGG TCGTCTCGGT TTAGTGCGAA TTTACAACGG AACTTTGGAA 
AAGGGCAAGA CTTACGGTCT TTCTCGCGTC GACGGTTCCA TTGAAAACTT CCGTGTTTCT 
GAGCTTCTTC GCACTCAAGG TTTGGAGCGC ACTCCTGTAG CTTCTGCAGG TCCTGGCGAC 
ATTGTTGCTG TTGCTGGCGT AAACGACATT ATGATTGGCG AAACTATCGT TGACCAAAAC 
GATCCAAAGC CGCTTCCATT AATTCATGTC GACGATCCTG CAATTTCTAT GACTTTCGGA 
GTAAACGATT CTCCTCTTGC TGGAACTGAA GGCAAGGATC ATAAGCTTAC TGCTCGTATG 
ATTAAGGATC GTTTGGATCG CGAGCTTATT GGTAACGTTT CTATTAAGGT TATTCCAACT 
GAGCGTCCAG ATGCTTGGGA AGTTCAAGGT CGTGGCGAGC TTGCTTTGGC TGTGCTAGCT 
GAGCAGATGC GTCGCGAAGG CTACGAGCTT ACAGTTGGTC GTCCTCAGGT TGTTACCAAG 
ACTATTGATG GTCAAATTAA TGAGCCTATG GAAAGCACTA CGATTGACGT CCCAGAAGAG 
TACATGGGTA CCGTCACTCA GCTTATGGCT GATCGCAAGG GTCGCATGGA TTCTATGAGC 
AACCACGGTT CTGGTTGGGT TCGTTTGCAA TTTACTGTTC CTTCGCGTGG TCTTATCGGT 
TTCCGCACTG CTTTGCTTTC TGCTACTCGC GGAACTGGTA TTGCAAGCTC TATTTCCGCC 
GGTTATGCTC CATGGGCTGG TCAGATTGTG ACTCGTCAGA ATGGTTCCAT GGTTTGTGAC 
CGCAAGGGTG TTGCAACTCC TTATGCTATG CAGCGTTTGC AAGCTCGTGG CGTATTCTTC 
GTTGATCCAC AAAGCCCAGT TTACGAAGGA CAAATCGTTG GTATTAACAA TAAGCCAGAT 
GAGCTGGATG TAAATATTAC GCTTGCTAAG CACATGACTA ACATGCGTTC TTCAACCGCT 
GATGTTCTCG AGACCTTGAC TCCGCCAATC ACGATGAGCT TGGAAGAGTC TCTTGACTTT 
GCTAACGAAG ACGAATGCGT GGAAGTTACA CCTGAAGCAA TTCGCGTGCG CAAGATTATT 
TTGAGCCGTG ACGAATGGTA TAAGTGGCGT GCTAAGCAGC GTCGTCAAAA CAACAACGCT 
GCATGA 

 

Protein sequence

MTVRGDIRNV AIVAHVDHGK TTLVNAMLQQ SHVFSEREEV PDRVMDSNDL EREKGITILA 
KNTAVQYTGP LAEKYGHPEG ITINVIDTPG HADFGGEVER GISMVDGVVL LVDASEGPLP 
QTRFVLRKAL EAKLPVILCV NKVDRPDARI EEVVGESTDL LLGLAQDVVE EGIDLDLDAL 
LDLPVIYCAA KAGYASVNQP ENGGLPDNDN LEPLFDSIIS NIPAPEYEEG APLQAHVANI 
DSSDFLGRLG LVRIYNGTLE KGKTYGLSRV DGSIENFRVS ELLRTQGLER TPVASAGPGD 
IVAVAGVNDI MIGETIVDQN DPKPLPLIHV DDPAISMTFG VNDSPLAGTE GKDHKLTARM 
IKDRLDRELI GNVSIKVIPT ERPDAWEVQG RGELALAVLA EQMRREGYEL TVGRPQVVTK 
TIDGQINEPM ESTTIDVPEE YMGTVTQLMA DRKGRMDSMS NHGSGWVRLQ FTVPSRGLIG 
FRTALLSATR GTGIASSISA GYAPWAGQIV TRQNGSMVCD RKGVATPYAM QRLQARGVFF 
VDPQSPVYEG QIVGINNKPD ELDVNITLAK HMTNMRSSTA DVLETLTPPI TMSLEESLDF 
ANEDECVEVT PEAIRVRKII LSRDEWYKWR AKQRRQNNNA A