| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0454 |
|---|
| Symbol | glyS |
|---|
| ID | 8709749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 497638 |
|---|
| End bp | 499158 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646482569 |
|---|
| Product | glycine--tRNA ligase |
|---|
| Protein accession | YP_003373698 |
|---|
| Protein GI | 283782944 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0423] Glycyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00389] glycyl-tRNA synthetase, dimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGTTT CAAAGCTTGA TGAAGTCGTT TCCTTGGCTA AGCGTCGAGG ATTTGTGTTC
CCAGCCGGCG AAATTTACGG TGGCACGCGT TCTGCGTGGG ATTATGGCCC ACTCGGTGTT
GCGTTGAAAG ATAATATCAA GCGCGAATGG TGGCGCTACA TGGTGACCAC GCGTGGAGAT
GTTGTTGGTG TGGATACTTC CGTTATTCTG CCTTCACAGG TGTGGGTTGC TTCCGGTCAC
GTTTCCGTGT TTAACGATCC TTTGATTGAG TGCTTGAATT GCCATAAGCG TCATCGTGCA
GATAAGTTGG AAGAGTCTTA TGCTGAAAAG CATGGCGATA AAATGCCAGA AAATGGCTTA
AAAGACATTG CTTGCCCAGA TTGCGGTACT CGCGGAAACT GGACTGAGCC ACGCGACTTC
AACATGATGC TTCGCACTCA TTTAGGACCG GTTGAAGACG AAAATAGCTT GCATTATTTG
CGTCCAGAAA CAGCTCAGGG CATTTTCGTT GATTTTAAGA ATGTCATGAC TTCTACTCGT
CAAAAGCCAC CTTTCGGTAT TGCAAATATT GGTAAGTCTT TCCGCAACGA AATTACGCCT
GGAAACTTCA TCTTCCGCAC TCGCGAGTTT GAGCAGATGG AAATGGAATT CTTCGTAGAG
CCTGGAACCG ACGAAGCTTG GCACCAGTAT TGGATTGACA CTCGCGTGCG TTGGTATGTT
GATTTGGGTG TGAAGCCAGA AAACTTGCGC ATGTATGAGC ATCCTAAGGA GAAGCTCAGC
CACTATTCCA AGCGCACTGT CGATATTGAA TACAAATTCG GCTTCCAAGG TTCGGATTGG
GGAGAGCTTG AGGGTATTGC AAACCGTACT GACTACGATT TGTCTGCTCA TGCTAAGCAT
TCCGGCGAGG ATTTGAGCTA CTTTAACCAG GCTACTGGCG AAAAGTATGT GCCTTATGTT
ATTGAGCCTG CGGCTGGTCT TACGCGCTCG CTTATGGCAT TCTTGGTTGA TGCTTACGAC
GTTGACGAAG CTCCAAACAC TAAGGGCGGA GTTGACAAGC GCACTGTTCT TCGACTTGAT
CCTCGTTTGG CTCCTGTTAA AGCTGCAGTT TTGCCTTTGA GCAAGAAGCC AGAATTGCAA
GCTGTTGCTC AAGATTTGGC TGCAGATTTG CGTCAGCATG ATTGGGTTAT CGATTACGAT
GAGGCTGGAG CTATTGGTCG CCGCTATCGT CGTGAGGACG AAATTGGTAC TCCTTTGTGC
GTAACAGTCG ACTTCGATAC TTTGGAAGAT CATGCTGTTA CAATTCGCGA GCGCGACACC
ATGCAACAAG AGCGCGTTTC TTTGGACAAG GTTGCAGATT ACGTTGCTAG CCGAATTAAC
GAAAAGCGCG TTAAGTATCC GCAAGGTCCT GTTGAAATCG TTGGTACTCG TGCAGCCGAC
GGTGCTACGG ATATTGCTAA AGAAGCTGGC GAAGACGAGT CTAAGCCTGT ACAAATCGCT
ACTGCTGGCG GATTGTACTA A
|
|---|
| Protein sequence | MAVSKLDEVV SLAKRRGFVF PAGEIYGGTR SAWDYGPLGV ALKDNIKREW WRYMVTTRGD
VVGVDTSVIL PSQVWVASGH VSVFNDPLIE CLNCHKRHRA DKLEESYAEK HGDKMPENGL
KDIACPDCGT RGNWTEPRDF NMMLRTHLGP VEDENSLHYL RPETAQGIFV DFKNVMTSTR
QKPPFGIANI GKSFRNEITP GNFIFRTREF EQMEMEFFVE PGTDEAWHQY WIDTRVRWYV
DLGVKPENLR MYEHPKEKLS HYSKRTVDIE YKFGFQGSDW GELEGIANRT DYDLSAHAKH
SGEDLSYFNQ ATGEKYVPYV IEPAAGLTRS LMAFLVDAYD VDEAPNTKGG VDKRTVLRLD
PRLAPVKAAV LPLSKKPELQ AVAQDLAADL RQHDWVIDYD EAGAIGRRYR REDEIGTPLC
VTVDFDTLED HAVTIRERDT MQQERVSLDK VADYVASRIN EKRVKYPQGP VEIVGTRAAD
GATDIAKEAG EDESKPVQIA TAGGLY
|
|---|
| |