| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0450 |
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| Symbol | recO |
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| ID | 8709076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 494224 |
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| End bp | 494970 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482565 |
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| Product | DNA repair protein RecO |
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| Protein accession | YP_003373694 |
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| Protein GI | 283782940 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1381] Recombinational DNA repair protein (RecF pathway) |
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| TIGRFAM ID | [TIGR00613] DNA repair protein RecO |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.207169 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCATTGT ATCGCGATGA AGCTGTTGTG CTTCGTACTT TTCCTTTAGG TGAAGCGGAT
AGGATTGTTG TGCTTCTTAC TAAGCGGCAT GGCAAAGTTC GTGCTGTTGC AAAGGGAGTT
CGTAGGCTTA AATCACGTTT TGGTGGTCGT CTTGAGCCGC TTATGCGTGT TGATTTGCTT
CTTGCACAAG GTAAATCTTT GGATGTAGTC TCGCAGGCTG TTTCTATTGC TGCTTATGCT
GGTGAAATTT GTGCAGATTA TACGTCCTAT GAGTATGCAA ACGTCATGCT TGAAGTTGTG
GATTTGCTTG TTTCTAACGA ATATACAGAT GAATACAGGC GTGAATATCA AGATACGCTA
GGGCAGTATC GTCTACTTAC TGCGGCTTTA CTTTCATTGT CCAAGCATAA GCATTCTCCT
GATGCTATTG GCGTGTCGTA TATATTGCGA GCATTGTCAT TAGCTGGGTG GTCTCCGCGA
CTACAAGCTT GTGTTGTATG TGGGAAAAAT GAAGATTTAT GCTATTTTTC GCCTTGCGCA
GGTGGAATGA TGTGTGCAAG CGATCACACT CCGGATTCAA TAGTTTGTGC TAATTCGACG
CGTTTGCAAT TGTGTGCTCT TGCGCAAGGA AACTGGTCTG TTCTTGACGG AGTGTCGGTT
GATTCTTCTA CTATGCGATG CGTTCAGCAA TGGGCTGAAT ATTATCTTGA GCGACCTATT
CGTTCGATGG GGTTGTTACA TTCGTAA
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| Protein sequence | MPLYRDEAVV LRTFPLGEAD RIVVLLTKRH GKVRAVAKGV RRLKSRFGGR LEPLMRVDLL
LAQGKSLDVV SQAVSIAAYA GEICADYTSY EYANVMLEVV DLLVSNEYTD EYRREYQDTL
GQYRLLTAAL LSLSKHKHSP DAIGVSYILR ALSLAGWSPR LQACVVCGKN EDLCYFSPCA
GGMMCASDHT PDSIVCANST RLQLCALAQG NWSVLDGVSV DSSTMRCVQQ WAEYYLERPI
RSMGLLHS
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