| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0427 |
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| Symbol | |
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| ID | 8709078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 467417 |
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| End bp | 468514 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646482542 |
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| Product | sortase family protein |
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| Protein accession | YP_003373674 |
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| Protein GI | 283782920 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000168911 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCTAG CTGATTTTGC AGAGTCTGCT CGCGCGCTAT TTAAGCGACT GACTCGTATG
CGCGCTAATA AGTCCTCCAA AAGTGCGCGA GATTCCGCAA GCTCGCAAGA TTACGCAAGC
TCTGAAATCG CTGCATCTTC CGAAAATACT GAATCTGCGC AATCTCCATC ATCGCAAGAG
CAGTCTTCCC TAAAACCAAT GTCTACACTT CGCAAGCTGG CTGAGCCGAT TGCGCTTGTT
GCTATTGGCA TTTTGTGTTT CAGCTATCCT GTGGTTTCTA CTTTGGTCAA CAATCATGCT
GCCAAGGAAC TCTCAATCGA GTACGACAAA TTAAATAAGG AAAAGCCTAA AGAAAATCGC
GCGGAAATTT TGCGAAAAGC GCGTGAATAC AACGCTCGCC ACAAGGCGAT TATTAGCGCG
GACCCGTATA ACGGCAATAA CGATTACATG GACACTCCCG AATATAAAGA GTACGAAAAA
GTGCTTAGTG AGCCGATGGG AATTATGGGC ATCGTGAAAA TACCAAAAAT TGGCGTGAGA
CTGCCGATTT ACCACGGAAC TACTCAAGAT ACACTAGCAA TGGGCGCGGG GCATTTGTAC
GGCACGGATT TGCCGGTGGG GGGCAAAAGC AGGCACACGG TTGTGACGGC GCATACGGGT
ATGCCGGATG CCACGATGTT CGATGATTTA AACACGTTGA AAAAAGGTGA CTACTTCTAT
TTTGATGTGC AAGGAAAGAC TCTTCGGTAC AAAGTGTTTC GCATAAATGT GGTGGAGCCG
AACGATATTC GTTTGCTGCG GCGTGAGAAG GGGCGCGACT TGGCGACACT GATTACGTGC
ACGCCGTATG GAATTAACAC GCACAGGCTG CTCGTGACGG GGTATCGCGT GCTGCCGGAT
CCTGCTAACG TGCCGGGTGA CCATATGCAG TGGCCGTTGT GGATGACGCT GTTTGTGATA
TCGATGGTGA TGTCTGCGGT GTTGATGGCG ATGATGCTGG TTGCGTCGTT GCGAAAGAAG
AATGGTGTGA GTAGTCTGCA AGGCAGGCAT TTGCTGGCGG TTTCGCGCAA AATGCTGCGT
AAGTTACGGC GCAAGTAG
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| Protein sequence | MKLADFAESA RALFKRLTRM RANKSSKSAR DSASSQDYAS SEIAASSENT ESAQSPSSQE
QSSLKPMSTL RKLAEPIALV AIGILCFSYP VVSTLVNNHA AKELSIEYDK LNKEKPKENR
AEILRKAREY NARHKAIISA DPYNGNNDYM DTPEYKEYEK VLSEPMGIMG IVKIPKIGVR
LPIYHGTTQD TLAMGAGHLY GTDLPVGGKS RHTVVTAHTG MPDATMFDDL NTLKKGDYFY
FDVQGKTLRY KVFRINVVEP NDIRLLRREK GRDLATLITC TPYGINTHRL LVTGYRVLPD
PANVPGDHMQ WPLWMTLFVI SMVMSAVLMA MMLVASLRKK NGVSSLQGRH LLAVSRKMLR
KLRRK
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