| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0422 |
|---|
| Symbol | |
|---|
| ID | 8708777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 454072 |
|---|
| End bp | 455217 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646482537 |
|---|
| Product | sortase family protein |
|---|
| Protein accession | YP_003373669 |
|---|
| Protein GI | 283782915 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.102959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA ACGACGCTGT TGCTAAAGTA TATGCTTTCC TCAACAAAAT CTCCCAAAAT
AAGCTTTTCA AAAACCAAAC AAACGCAACC CAAACTAACG AAACCAACTT AACCGAAACC
AACTTAACCG AAACCAACTT AACCGAATCA AACGCAACCG AAAATAACGC AACTCAAGCC
CACGCAACCG AAGCAAAATC CGCCGAAAGT AATCAAAAAT CTAAGCAAAA AACCAATCGA
AAATCTAAGC TCCGCCGCAT CGTCGAGCCA ATCGCATTCG TGTTGGCAGG CATTTTGTGC
TTCAGTTACC CTGTTGTTTC AACACTTTGG AACAATCGCG TGTCGAAGGA AATTTCTAAC
GCGTACGACA AGTATAACCA CGATCAGGCT GGTGATGTGC GCCGCGCTCA CATTCGCGCA
GCGAAGCTTT ACAATAAAAG TCGCAAGAAT ATGCTTACCA CGGATCCGTA TGGTCCGGAT
GGTCAAAAAG ACGTAACTAA CACGCCTGAA TACAAGCGTT ATCTTAAGGC ACTTGAGGAG
CCTATGGGCA TTATCGGCAT CGTAAAAATT CCGAAAATTG GCGTAAAACT TCCTATTTAT
CACGGCAGTT CGCAGGAAGT TTTAGCGCAC GGCGCTGGTC ATTTGTACGG CACAGATTTG
CCGGTTGGTG GCAAGAACCG CCACACAGTT ATTACCGCGC ACACGGGTCT TGCGGATGCA
ACCATGTTCG ATGATTTGGT GAATTTAAAG AAGGGCGACT ACTTCTACCT CGACGTGCAA
GGCGAAACTT TACGATACAA AGTGTTCCGC ATCAGCGTGG TTGAGCCACA CGATATTAGT
TTGTTGCAGC GCGAAAAGGG TCGCGACTTG GCGACGCTGC TAACGTGTAC CCCGTATGGT
GTGAACTCGC ATAGGCTTTT GGTGACGGGG TATCGTGTGC TGCCGGACCC TGTGAAGCCG
CCGGATGACC ACGTGCAATG GCCGCTTTGG ATGACGCTAT TCGTGATTGC AATGGCGTTC
TCATTGATTG TTTTGTCCAT GATGATTGCT GCTGCAACGT CTAAGCGAGG GCGACAGCTC
GACATTCGCG GCAAGCATTT GCTGATCCTT TCGCGCAAAA TGCTGCGTAA GTTGCGTCGC
GAGTAA
|
|---|
| Protein sequence | MKLNDAVAKV YAFLNKISQN KLFKNQTNAT QTNETNLTET NLTETNLTES NATENNATQA
HATEAKSAES NQKSKQKTNR KSKLRRIVEP IAFVLAGILC FSYPVVSTLW NNRVSKEISN
AYDKYNHDQA GDVRRAHIRA AKLYNKSRKN MLTTDPYGPD GQKDVTNTPE YKRYLKALEE
PMGIIGIVKI PKIGVKLPIY HGSSQEVLAH GAGHLYGTDL PVGGKNRHTV ITAHTGLADA
TMFDDLVNLK KGDYFYLDVQ GETLRYKVFR ISVVEPHDIS LLQREKGRDL ATLLTCTPYG
VNSHRLLVTG YRVLPDPVKP PDDHVQWPLW MTLFVIAMAF SLIVLSMMIA AATSKRGRQL
DIRGKHLLIL SRKMLRKLRR E
|
|---|
| |