| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0365 |
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| Symbol | |
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| ID | 8709855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 393202 |
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| End bp | 396273 |
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| Gene Length | 3072 bp |
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| Protein Length | 1023 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482481 |
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| Product | putative ATP-dependent DNA helicase PcrA |
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| Protein accession | YP_003373615 |
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| Protein GI | 283782861 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01073] ATP-dependent DNA helicase PcrA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTAA GTATGGGCGC AAGTATGAAT GCAAATATGA GTGCAAAGGA TAGCGATTAC
GGATATGTAA GTGATTTGTT GGGGAATCCA GTTGATTCGT TCGATTCTGA CGATCGTTTT
TACGAGAATG TTGCGGATGC GAATGATTAT GCCAACTACA GTTACGACGA GTATGCTGAC
GCTTACGCTA AAGAGCCTGA TTTTACGCAG CAAGAATATG CGTCTGATCA AGAATCAGTG
CCTCCTCAAG AATCAGTGCC TCCTCAAGAA TCAGTGCCTC CTCAAGAATC AGTGCCTTCC
CAAGAATCAG TGCCTTCCCA ACAAGAAGCT CTTGCCCAAC AAGAACTGCT TCCTCAAGAA
TCTCAAGAAT ATTCCCAAAA TTTCGCACAT TCTAGAGTTG CAGTTGACGC GCAAAAACTA
CTCGACGGCT TAAATCCGCA ACAATCTCAA GCAGTCCAGT ACGACGGACC GGCACTGCTT
ATTGGAGCAG GAGCTGGAAG CGGCAAAACG CGAGTTCTTA CGCGAAGAAT AGCTTGGATA
TTAAGCCAAA AAGGTGCCTG GCCAAGCCAA ATTCTTGCCA TCACTTTTAC AAACAAAGCA
GCTGCCGAAA TGCGTGAACG TTTAAGCAAA CTTATTGGTA GCGAAGCAAA TACTATGTGG
GTTTCGACGT TCCACTCTGC ATGTGTGAAA ATACTTCGCA GATCAGGACA GTATATTGGC
TTAAAATCAG GCTTTTCTAT TTACGATACT TCCGATTGCG AGCGATTAGT AAAAATTATT
GCAACAGAGC TTAACGTTGA TATTAAGCGT TTTACGCCAC GCAGCATTTT GGGCAAGATT
TCGGATTGCA AAAATAGTTT AATCACTTGG CGTGAGCAAC TAGACATGTA TGCTAACGAT
TACAAGCCTG GTGTTGCAGG TCAACAAATT GCGCACGCTG GCAATTCTGA AGCTGTTTAC
GCAACTATTT ATGCGGAATA TCAGCATCGT TTATCTCAAG CAAATGCGGT TGATTTTGAC
GATTTAATTA TGCGAACTGT GCAACTCATG CGCGAAGTAC CAGAAGCTGC GCAATATTAC
CGCCATAAGT TCCGCTATAT TCTTGTAGAC GAGTACCAGG ATACGAATCA CGCTCAATAC
GAGCTTATTC GCGAGCTTGC TGGAGTGGAT GTAAAGCAAA ATAGTGCAAA TCCATCTCAG
CAAAATAACA CTCCTGCATC AATCACAGTT GTAGGCGACT CCGACCAGTC GATTTACGCT
TTCCGCGGAG CAGATATTCG CAATATTCAA GACTTTGAAA AAGATTTCCC AAACGCTACA
ACTATTATGC TTGAGCAAAA TTATCGCTCT ACGCAAACTA TTTTGGATGC TGCAAATGCA
GTTATTTCGC ATAATCAAGG ACGAAAGCCT AAAAAATTGT GGACGGCATT AGGTAAGGGC
ACTCCAATTA CTGGTTATGC AGCAGACAGT GCTCAACAGG AAGCAGCTTG GGTTGCGCAA
GAAATAGCGC GATTAGCAGG TGAAGAGGGC GTTGCTTATT CGGATATGGC GATTATGTAT
CGCGCTAATG CACAGTCTCG TTCGCTGGAA GATGCGCTCG TTAAAGCAGG TCTTCCGTAT
CAACTTGTTG GCGGCACGAA GTTTTACGAG CGTCGCGAAG TAAAAGATGC GCTCGCATAC
TTGCAATCTA TGGCAAACCC AGATGACGAT GTGAATATGC GCCGAATTTT GAATGTGCCT
AAGCGTGGGC TTGGAGCGCG TGCGGAGGCT TTGCTAACGC TTTACGCTCA AACACAAGGA
GTTAGCTTCT GGCAAGCTTT GGAGCATTTG GAGTCAATCG AAGGCATGCC AACTCGCACT
GCAACCAAGC TTAAAGAGTT CCGCGAGCTT ATGCACAATT TAATTACTTG TATGCAAAAC
GATGACTCGA AACCTTCTAA AGTTATTGAC AGCATACTGA ACGACAGTGG TTTGCTGGAG
GATTTGCAAC GTTCTGAAGA TCCTCAAGAT GCCGCTCGCG TGGATAATTT GTCACAATTG
CAGTCGGTTG CAGCTGAGTA TGAGCAGAAT ACGCCGGATG CTAGTGTTGC TGGTTTCCTT
GAAACGACGG CGCTTGTGGC TGATTCGGAT CAATTGCCGG ATGAAAATGA GGACACTGGT
AAAGTTACGT TGATGACGCT TCACACGGCT AAGGGTTTGG AGTATCCGGT TGTGTTCCTA
ACTGGCATGG AGCAGGGAAC TTTTCCGCAT TCTCGCGCTT TGGAAGACGA TGGCGAGCTT
TGCGAGGAGC GTCGTCTTGC TTATGTTGGT ATTACGCGAG CTAAGCAGCG TTTGTATGTT
ACGCGTGCTG CTGTTCGTGC GCAATGGGGG CAGGCTCAAG ATATGCTTCC AAGCCAGTTT
TTGGATGAGA TTCCAGATAA TTTGATTGAT TGGAAGCGCA GAGAGTCTGA TGTTGAGCGT
TGGGGTGCTT CGTCTAGACG CGGCGATGAT TTCGATAGCG ATTTTGATAG TGATTTTGGC
GGCGATTTTG ATAGCGACTT CGGCGGCTGG GATGACGATT ATAGCGATGC GTTTAGTGAA
AAAACAACTT ATGGTGGAAG CAGTTACAGT TCTGAAAAAT CGCATGGCTC TAAGTCTTAC
GGAAGAAATA AATCGTATGG CTCGAGTTCT TACGGAAGAA ATAAATCGTA TGGCTCGAGT
TCTTACGGAT CTTCTTACGG AAAGTCTTAT AGCAAGTCTT ATGGCTCTTC TTACGGTTCT
TCTTACGGCT CGTCTTATTC TAAATCGAAT TGGTCTAAGT CAAGTGCAGT AAAAACGCGC
AAAGTTACCG CAAAAACTGC GGCTTCAACA AACGCAACAA AAGTTGGTTC AACTTCCGCA
GTTATGAATA AAGACAATCA TCTAAATATT CAAGACTTCC AAGTTGGCGA CAAAATTACT
CACGATACTT ACGGCTTAGG AACTGTGCTA GCAACGCAAG ATAAGGGCAG AAACTCAATT
ATTACAGTCG ATTTCGGCTC CGATGGAGTA AAGCGACTAA TGCTTAGAGT TGCACCAATC
GAGAAATTGT AA
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| Protein sequence | MSVSMGASMN ANMSAKDSDY GYVSDLLGNP VDSFDSDDRF YENVADANDY ANYSYDEYAD
AYAKEPDFTQ QEYASDQESV PPQESVPPQE SVPPQESVPS QESVPSQQEA LAQQELLPQE
SQEYSQNFAH SRVAVDAQKL LDGLNPQQSQ AVQYDGPALL IGAGAGSGKT RVLTRRIAWI
LSQKGAWPSQ ILAITFTNKA AAEMRERLSK LIGSEANTMW VSTFHSACVK ILRRSGQYIG
LKSGFSIYDT SDCERLVKII ATELNVDIKR FTPRSILGKI SDCKNSLITW REQLDMYAND
YKPGVAGQQI AHAGNSEAVY ATIYAEYQHR LSQANAVDFD DLIMRTVQLM REVPEAAQYY
RHKFRYILVD EYQDTNHAQY ELIRELAGVD VKQNSANPSQ QNNTPASITV VGDSDQSIYA
FRGADIRNIQ DFEKDFPNAT TIMLEQNYRS TQTILDAANA VISHNQGRKP KKLWTALGKG
TPITGYAADS AQQEAAWVAQ EIARLAGEEG VAYSDMAIMY RANAQSRSLE DALVKAGLPY
QLVGGTKFYE RREVKDALAY LQSMANPDDD VNMRRILNVP KRGLGARAEA LLTLYAQTQG
VSFWQALEHL ESIEGMPTRT ATKLKEFREL MHNLITCMQN DDSKPSKVID SILNDSGLLE
DLQRSEDPQD AARVDNLSQL QSVAAEYEQN TPDASVAGFL ETTALVADSD QLPDENEDTG
KVTLMTLHTA KGLEYPVVFL TGMEQGTFPH SRALEDDGEL CEERRLAYVG ITRAKQRLYV
TRAAVRAQWG QAQDMLPSQF LDEIPDNLID WKRRESDVER WGASSRRGDD FDSDFDSDFG
GDFDSDFGGW DDDYSDAFSE KTTYGGSSYS SEKSHGSKSY GRNKSYGSSS YGRNKSYGSS
SYGSSYGKSY SKSYGSSYGS SYGSSYSKSN WSKSSAVKTR KVTAKTAAST NATKVGSTSA
VMNKDNHLNI QDFQVGDKIT HDTYGLGTVL ATQDKGRNSI ITVDFGSDGV KRLMLRVAPI
EKL
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