| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0304 |
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| Symbol | |
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| ID | 8709292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 330028 |
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| End bp | 332349 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482422 |
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| Product | transglycosylase |
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| Protein accession | YP_003373559 |
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| Protein GI | 283782805 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.201618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAAAA AGAATTCACT GACTGTTCGC CGTGTGTTAG CACTGTTCCT TACCTACATC
ACTTTGTGTG TTGCAGGAGG TATTGCAGCA AGTATTATGT TTGTTCCTGG CGTAATGAGC
GTGAATAGTG TAGTGAAAAC AGTAGTGCCT TCACTTCGCG TTGACGGCAT CGATTTTGAT
GTTACCGCGT TGCCGCAAAA ATCGCGACTT TACGCTTCTG ATGGCAAAAC TATTATTGCA
ACTTTTTATG CTCAAAATCG CACTGTAGTA CCGCTTCGAC GCATATCGCA ATATATGCAG
CGAGCAATGG TTGCTCGTGA AGACCGTCGA TTCTTTGAGC ATTCCGGCGT AGATATGCAA
GGTGTTATTC GCGCATTCGT GCAAACATTC GTTAAAAAGG GAGATATGCA AGGTGGCTCT
TCCTTAACTC AGCAATATGT AAAAAATGTG CTTATGATTA AAGCTCGCGA AAATAACGAT
CCTTTAGCTG AGTATCACGC TTCTGAAGGC ACTATTGCAC GTAAATTACG CGAAATGCTT
ATTGCAATTC AAATGGAGAA AAAATACTCT AAACTTGAGA TTTTGCAGGG ATATTTAAAT
ATTGCGCAGT TCGGTAGCAA TAATATTTAC GGCGTAGAAA CTGCAGCTCA TCGCTACTTC
AATACGAGCG CTGCAAAACT TAATCTTGTG CAATCAGCAA CTATTGCTGC AATTACAAAG
AATCCTTCGC GTTATGATCC TTCTATTGAA ACAAATCAGC CTGAAGCGCA AAAGCAGCGC
AATATTGTAC TTGATTTAAT GCTTCGTCAA GGTTTTATTA CTAAGAGCGA GCATGATTCC
GCTGTTGCTA TTCCTCTTAA AAGCACTCTT AACATACAGA GGGAAGTTTC TAAAATTGGA
TGTCAAGCTG CAGGCGACGC AGCATTCTTC TGCGATTATG TGACGAAGAA AATTTTGCAC
TCTCGCGAGT TTGGTAAAAC TGCTGCCATG CGCGAAAAGT TGCTTACTGA GGGTGGTCTT
GATATTTACA CAACTATGGA TTTGCGTGCT AGTAAGGCTG CTATGAAAGC TGCTAGGGAT
ACGATTCCTG TAAATGATAA GAGCGGTTTT GAGGTTTCAA TTGCGGCAAT TAAGCCTGGA
ACTGGTGAAG TTTTGGCGTT TGGTAGCAAT CGTATTTATG ATGCTACGGA TGCTGCAAAA
TCAGATCCTA CGCATACGGC TTTGAACTAC GCTGTCGATG AACGAGATGG TGGCGGTCTC
GGTTGGCAAA TTGGTTCTAC TTGGAAGCCA ATTAATATGG TTGCGTGGAT GCTTGCTGGA
AAGTCAATTA ATCAGCCTCT TCGCACTTCT ATGCTTTATA ATAATGCTGA TTTTAATTGC
AGCAAATTCC GCGGAGTTGG TAGTTGGTCA GTTCAAAACT CTGGTGGTGG CACAACTAAT
CCGGAAACTC CTTTGCAAGG TCTTGTGCGC TCGCATAACA CCACTCAGGC TTCTATGGCT
CAGCAAATTA AGCTGTGTTC AATCGCGGAT GCTGCTCGCA TACTTGGCTA CCACAATTCG
CCTCTTGGTC AGGAAAGCGT GTATTCTGCT AACTCGCTTA ATCCGCCTAT GACGATTGGT
TCTGTGCAAG CTTCGCCTTT AACTGTGGCG AATGTGTATG CAACTATTGG TGCTGATGGC
GTGGCATGTG ATCCTATTGC TATTAAGCGA GTTGTTGACA AAAACGGTAA GCGTTTGAAA
GTTCCTAGTG CGCATTGCCA TCAAGCAATT CCAAAGGGAA TCGCTCAAAC TGCTGCTTAT
GCGCTGAATC AGGGTGTTGT GCAACCTGGC GGCGAGGCTT CAACTACACA ACTTGATGGC
GGTCGCAAGA CTTTCGCAAA AACTGGTACT AACGAGCAGT ACTACATGAC TACAGCTGGT
TTTGTGCCGT ATCAAGTTGC TTCGTTTGTG GCAGTTGGTA ACGCTGAATC ACAGAAAAGC
TTTAATGGCA TGACTATTAA CGGTCGCACA ATGGCAGCTT GGTACGGTAT GTATATTGCA
ACCCCAGCGT GGAAACAGTT TATGAACGAC TATTTGAAAG CTGCTAACAT TCCTGTTGAC
AACGATTATG GCAAGCCTGA TCCAAAGTAT ACTGCCGGTG GAACTCTGCC CGGCACGCCT
AAAAATACTG TTAAAACTGA TCAGCAGAAG CGAGATGAAG ACGCCAGAAA GCAGGCAGCA
CAAGAACAGC AGGAAGAAGC TAAGACGCAA AAGAACACGC AAGATCAGTA CGGCACTGCT
CGCCGCGACG ACTATGGTGA TTCAGAAACT GATAATTACT AA
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| Protein sequence | MSKKNSLTVR RVLALFLTYI TLCVAGGIAA SIMFVPGVMS VNSVVKTVVP SLRVDGIDFD
VTALPQKSRL YASDGKTIIA TFYAQNRTVV PLRRISQYMQ RAMVAREDRR FFEHSGVDMQ
GVIRAFVQTF VKKGDMQGGS SLTQQYVKNV LMIKARENND PLAEYHASEG TIARKLREML
IAIQMEKKYS KLEILQGYLN IAQFGSNNIY GVETAAHRYF NTSAAKLNLV QSATIAAITK
NPSRYDPSIE TNQPEAQKQR NIVLDLMLRQ GFITKSEHDS AVAIPLKSTL NIQREVSKIG
CQAAGDAAFF CDYVTKKILH SREFGKTAAM REKLLTEGGL DIYTTMDLRA SKAAMKAARD
TIPVNDKSGF EVSIAAIKPG TGEVLAFGSN RIYDATDAAK SDPTHTALNY AVDERDGGGL
GWQIGSTWKP INMVAWMLAG KSINQPLRTS MLYNNADFNC SKFRGVGSWS VQNSGGGTTN
PETPLQGLVR SHNTTQASMA QQIKLCSIAD AARILGYHNS PLGQESVYSA NSLNPPMTIG
SVQASPLTVA NVYATIGADG VACDPIAIKR VVDKNGKRLK VPSAHCHQAI PKGIAQTAAY
ALNQGVVQPG GEASTTQLDG GRKTFAKTGT NEQYYMTTAG FVPYQVASFV AVGNAESQKS
FNGMTINGRT MAAWYGMYIA TPAWKQFMND YLKAANIPVD NDYGKPDPKY TAGGTLPGTP
KNTVKTDQQK RDEDARKQAA QEQQEEAKTQ KNTQDQYGTA RRDDYGDSET DNY
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