| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0291 |
|---|
| Symbol | |
|---|
| ID | 8709438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 312525 |
|---|
| End bp | 314048 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646482409 |
|---|
| Product | permease, cytosine/purine, uracil, thiamine, allantoin family |
|---|
| Protein accession | YP_003373546 |
|---|
| Protein GI | 283782792 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1457] Purine-cytosine permease and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAT CTCAAGTAGG AGAATCTAAA ACTCAACAAG CCACAGACTC GTCGAGTCAA
CATTCCTTAA GCATTGAGGA ACAAGGCATA GACACAATCA GTGAAAGCGA ACGTAAAGGA
ACGCCATCAA GCCTATTCTG GCCGTGGTTT GCATCAAATA TTTCTGTATT TGCAATGTCG
TACGGAGCGT GGGCGCTTGG TTTTGCAATA TCCTTCTGGC AGGCAACGCT GATGACAATA
ATCGGCGTAA TCGTATCATT CTTGCTGGTT GGGGTAATCT CAATAGCCGG CAAACGCGGA
AACGCTCCAA CAATGGTATT GACTCGCGCA ACGTTCGGCG TACGTGGAGC AAACATTCCA
GCAGCACTAA GTTGGATTGC AACGCTCGGA TGGGAGATTT CTCTAGCAAT AACTGCCGTT
CTTGCAATGG CAACAGCCGC AGAAAAGATC GGCTGGGGTA GTGGTACGAG TGTTAAAATC
GTGAGCACAA TCATCGTAGT TGGATTAATT GTAATTGTTG GAATTTACGG CTACGACTTA
ATTATGAAGT GTCAGCAAGT TATAACAATT GTAACGGGAA TAATCACTCT TGGATTCTTC
GTACTAGGTT GGGGACACAT AAACTTTGCT GCGATTGGTC AAATTCCAAA CGGATCTCTT
CCTGCAATGC TCGGTTGCTG CTTCTTCGTT ATGACTGGCT TCGGCGTAGG CTGGGTTAAT
GTTGCGGCTG ATTACTCTAG ATACTTGCCT AGAAAATCTT CAAATAGCGG AATCGTTTTT
TGGACTACTT TTGGAGCGTC AATTGCAAAC GTGTTCCTAA TTTTCTACGG TCTTCTACTC
GCAGCTTCTA ATATGGAATT AGCTCAAAAC GTTGGAAACG ACCCGATTGG AGCAATTGCT
GCAATCTTGC CAGCGTGGTA TTTGATTCCG TACACGATTG TAGCGGTTCT AGGACTTATG
TCTGGAGCAA TTATGGACAA TTATTCAAAC GGTCTTGCGT TGCTATCTTT TGGAATACGT
ATTCCTCGAA CTGTTGCAGC AATTATTACT GCAATTCTAA CTACTCTTGG CGTTGTTTAT
GTCACGTTCT TCTCCGACAC ATTTATTGGA CCATTCCAAG GCTTCTTAAC GACTTTGGGA
GTGCCAATGG CTGTTTGGGC TGGAATGTTT ACTACGGATG TGCTTGTTCG CAAAAAAGAT
TATTGCACTG AGGACTTGTA TAAGCCGGAA GGTCGCTACG GTGCTTGGAA TGTTAAAGCT
TTTGCAATTC TTTGCGTTGG AACGATTGTT GGATGGGGTT TGGTCGTAAA CTCTGCAGCG
AAATGGCTTA CATGGCAAGG TTATTTGCTT TGGTTTGTTG GCGGAAAATC AAGTAGCTGG
GCTGGTGCAA ACTTGGGCGT AATAGTTGCG CTACTAATCG GCTTAATTGG CTCTTTAATT
TTCCAGCGTA AAGATATTGC TAAGCAAGAA GCGGATTTGC CAACAAGCGA AGTAGGTTTG
CAGACAAGCG AAATTGCAGA ATAA
|
|---|
| Protein sequence | MSKSQVGESK TQQATDSSSQ HSLSIEEQGI DTISESERKG TPSSLFWPWF ASNISVFAMS
YGAWALGFAI SFWQATLMTI IGVIVSFLLV GVISIAGKRG NAPTMVLTRA TFGVRGANIP
AALSWIATLG WEISLAITAV LAMATAAEKI GWGSGTSVKI VSTIIVVGLI VIVGIYGYDL
IMKCQQVITI VTGIITLGFF VLGWGHINFA AIGQIPNGSL PAMLGCCFFV MTGFGVGWVN
VAADYSRYLP RKSSNSGIVF WTTFGASIAN VFLIFYGLLL AASNMELAQN VGNDPIGAIA
AILPAWYLIP YTIVAVLGLM SGAIMDNYSN GLALLSFGIR IPRTVAAIIT AILTTLGVVY
VTFFSDTFIG PFQGFLTTLG VPMAVWAGMF TTDVLVRKKD YCTEDLYKPE GRYGAWNVKA
FAILCVGTIV GWGLVVNSAA KWLTWQGYLL WFVGGKSSSW AGANLGVIVA LLIGLIGSLI
FQRKDIAKQE ADLPTSEVGL QTSEIAE
|
|---|
| |