| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0271 |
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| Symbol | secY |
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| ID | 8709206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 293258 |
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| End bp | 294601 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482390 |
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| Product | preprotein translocase, SecY subunit |
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| Protein accession | YP_003373528 |
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| Protein GI | 283782774 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAACGT TAATCCAGGC CTTCAGGACG AAGGAGTTGA GGAACAAGAT CCTCTTCGTC
TTCGCTATGA TAATTATTTA TCGTATTGGT TCATTTATTC CGATTCCGGG TGTGGACTAT
AAAGTTGTGC ACGCTTGCAC TGTTAAATTA GCTTCATCGA GCGAGAACTT TATTGGGTTA
GTTAACTTGT TCTCAGGTGG CTCGCTGTTG CAGCTTTCTA TTTTTGCTTT GGGTGTTATG
CCTTACATCA CTGCTTCCAT TGTGATTCAG CTTTTGCGCG TGGTTATTCC TCGCTTCGAA
GCTCTTCATA AGGAAGGTCA GTCTGGAGAA ACAAAGCTTA CGCAGTACAC GCGTTACCTA
ACTATTGGAT TGGCAATTTT GCAATCTACT ACGATTTTGG TAACAGCACG TACGGGTGCT
TTGTTTAATT ATCAGTGCGG AAATAATATT ATTCCAGACG GAAGCATGTG GAGCCTTATT
GTCATGGTTT TGATCATGAC TGGCGGCACT GGTCTTATTA TGTGGATGGC AGAACTCATT
ACCGATAAGG GTATCGGTCA AGGCATGTCT GTCTTAATCT TTATGTCTAT TTGCTCTGGC
TTCTTACCAA AGCTTTGGGA GATTGGTTGG GGAACCAACG GTTCTAATGG CGATTGGAAT
AAGTTCGCTA TTGTTGGTGG CGTTTTGATT GTTATCCTCA TATTTGTTGA CTTTGTTGAG
CTTGCTCAGC GTCGTATTCC TGTGCAGTAT ACGCGTCGCA TGATTGGCCG AAAAATGTAT
GGCGGCTCTT CGACTTATTT GCCATTAAAG GTAAATATGA GTGGTGTTAT TCCACCAATC
TTTGCTTCGT CAATTCTTGC TGTTCCTACC CTTATTGCTC AGTTTGGAGA TAAGAGCAAG
GCTTGGGTGA ATTGGATTGA AGCTAATTTG GCTAATTCCA CTTCTGCTTG GTATATTGCG
TTTTACACAG TAATGATTGT GTTCTTCTGC TTCTTCTACA CAGAGATTAC TTTTAATCCT
GATGAGACTG CAGATAACAT GAAAGAGTAT GGTGGCTTCA TACCAGGCAT TCGCGCTGGT
AGTGCTACAA GTCATTATCT TAGCTATGTT ATGAATAGGT TGAATACTGT CGGTGCTATT
TATTTGCTCT TTGTTGCATT GATTCCTACC GTTTTGATTA TGGCTTTGCA TTTGAATACA
AAATTGCCAT TTGGTGGTAC AACAATTTTG ATTATTGCTG GCGTTGGTTT GGATACGTTG
CGTCAAGCAA AGGCTCAGAC TGAACAATTC CAGTATGCTG GTTTCTTGTT CAAGCATGAT
GAGCAAAAGC AAGTATCTAA GTAA
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| Protein sequence | MKTLIQAFRT KELRNKILFV FAMIIIYRIG SFIPIPGVDY KVVHACTVKL ASSSENFIGL
VNLFSGGSLL QLSIFALGVM PYITASIVIQ LLRVVIPRFE ALHKEGQSGE TKLTQYTRYL
TIGLAILQST TILVTARTGA LFNYQCGNNI IPDGSMWSLI VMVLIMTGGT GLIMWMAELI
TDKGIGQGMS VLIFMSICSG FLPKLWEIGW GTNGSNGDWN KFAIVGGVLI VILIFVDFVE
LAQRRIPVQY TRRMIGRKMY GGSSTYLPLK VNMSGVIPPI FASSILAVPT LIAQFGDKSK
AWVNWIEANL ANSTSAWYIA FYTVMIVFFC FFYTEITFNP DETADNMKEY GGFIPGIRAG
SATSHYLSYV MNRLNTVGAI YLLFVALIPT VLIMALHLNT KLPFGGTTIL IIAGVGLDTL
RQAKAQTEQF QYAGFLFKHD EQKQVSK
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