Gene HMPREF0424_0270 details

Gene Information

• Locus tag: HMPREF0424_0270
• Symbol: rplO
• ID: 8709580
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 292608
• End bp: 293063
• Gene Length: 456 bp
• Protein Length: 151 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 646482389
• Product: ribosomal protein L15
• Protein accession: YP_003373527
• Protein GI: 283782773
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0200] Ribosomal protein L15
• TIGRFAM ID: [TIGR01071] ribosomal protein L15, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTAACG AAGAACCAAT GCTGCATATG CACACGTTGC GTCCAGCTCC AGGAGCTAAG 
AAGGATCGCA TCCGTGTAGG TCGTGGTGAA GGCTCTAAGG GTAAGACCTC AGGTCGTGGT 
GATAAGGGCA CAAAGAAGCG TTATCAGGTT CGTCCTGGCT TCGAAGGTGG TCAGCTCCCA 
CTGTACATGC GCTTGCCTAA GTTGCGTGGC TTCAAGAGTC CTTTCAAGAA GGAATTCCAA 
GTCGTCAACG TTGCAGATCT TGCTGACCTT TTCCCAAAGG GTGGCGAGGT TACTGTAGCT 
GACCTTATTA CTAAGGGCGC TGTACGTGAT GGCTATCCTG TAAAGGTTCT TGGCGATGGT 
GAATTGACTG TTGCTTTGAC TCTTAAGGGT ATGAAGGCTT CTGCTTCTGC TAAGGCAAAG 
GTTGAGGCTG CCGGCGGCTC CATCAGCGAA GAGTAG 

 

Protein sequence

MANEEPMLHM HTLRPAPGAK KDRIRVGRGE GSKGKTSGRG DKGTKKRYQV RPGFEGGQLP 
LYMRLPKLRG FKSPFKKEFQ VVNVADLADL FPKGGEVTVA DLITKGAVRD GYPVKVLGDG 
ELTVALTLKG MKASASAKAK VEAAGGSISE E